BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497468
Length=1198
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29410.1 | Symbols: MTPB1, ATMTPB1 | metal tolerance protein... 1472 0.0
> AT2G29410.1 | Symbols: MTPB1, ATMTPB1 | metal tolerance protein
B1 | chr2:12616564-12617987 FORWARD LENGTH=1295
Length=1295
Score = 1472 bits (797), Expect = 0.0
Identities = 910/962 (95%), Gaps = 17/962 (2%)
Strand=Plus/Plus
Query 251 ATTGTGGGAGGTTTTAAGGCAAATAGTCTTGCGGTTATGACGGATGCTGCGCATTTGTTG 310
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 334 ATTGTGGGAGGTTTTAAGGCGAATAGTCTTGCGGTTATGACAGATGCTGCGCATTTGTTG 393
Query 311 TCGGATGTGGCGGGTATGGGTGTCTCTTTGTTGGCTATCAAGGTCTCGAGCTGGGAAGCT 370
||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||
Sbjct 394 TCGGATGTGGCGGGTTTGTGTGTCTCTTTGTTGGCGATCAAGGTCTCGAGCTGGGAAGCT 453
Query 371 AATCCGAGAAACTCGTTTGGGTTTAAACGGCTTGAAGTTTTAGCGGCGTTCTTGTCTGTT 430
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 AATCCGCGAAACTCGTTCGGGTTTAAACGGCTTGAAGTTTTAGCGGCGTTCTTGTCTGTT 513
Query 431 CAGCTTATATGGCTTGTCTCTGGAGTTATAATCCATGAAGCCATTCAAAGACTAGTTAGC 490
||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 514 CAGCTCATATGGCTTGTCTCTGGAGTGATAATCCATGAAGCCATTCAAAGACTACTTAGC 573
Query 491 AGAAGCAGAGAGGTTAATGGTGAAATCATGTTTGGGATTTCGGCTTTCGGATTTTTCATG 550
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 574 AGAAGCAGAGAGGTTAATGGAGAAATCATGTTTGGGATTTCGGCTTTCGGGTTTTTCATG 633
Query 551 AACTTGGTTATGGTCCTTTGGTTAGGACATAACCATAGccaccacca-c-c-acca-c-- 604
||||||||||||||||||||||||||||||||||||||||||||||| | | |||| |
Sbjct 634 AACTTGGTTATGGTCCTTTGGTTAGGACATAACCATAGCCACCACCACCACGACCATCAT 693
Query 605 caccaccatc--aa-cat---catcatcatcaacatcatcaCAAGGAGGTGGTGGCTGAA 658
||||| |||| || ||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 694 CACCATCATCATAATCATAAACATCAACATCAACATCATCACAAGGAGGTGGTGGCAGAA 753
Query 659 GAGGAGGATGAGGAAATGAATCCTTTAAAAGGTGAGAAATCATCGTCAAAGGAGATGAAC 718
|||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 754 GAGGAGGAGGAGGAAATGAATCCTTTAAAAGGTGAGAAATCGTCTTCAAAGGAGATGAAC 813
Query 719 ATTAACATACAAGGAGCTTATCTTCACGCAATGGCTGATATGATTCAGTCACTTGGTGTT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 814 ATTAACATACAAGGAGCTTATCTTCACGCAATGGCTGATATGATTCAGTCACTAGGTGTT 873
Query 779 ATGATCGGTGGAGGTATCATTTGGGTGAAACCGAAATGGGTTTTGGTTGATTTGATTTGT 838
||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 874 ATGATTGGTGGAGGTATCATTTGGGTAAAACCAAAATGGGTTTTGGTTGATTTGATTTGC 933
Query 839 ACTCTTGTTTTCTCTGCTTTTGCTCTTGCTGCTACTTTACCAATGCTCAAGAACATATTT 898
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 934 ACTCTTGTTTTCTCTGCTTTTGCTCTTGCTGCTACTCTACCAATTCTCAAGAACATATTT 993
Query 899 GGAATACTGATGGAACGCGTACCGCGTGATATGGACATAGAGAAGCTCGAAAGAGGACTT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 GGAATACTGATGGAACGCGTACCGCGTGATATGGACATAGAGAAGCTCGAAAGAGGACTT 1053
Query 959 AAGCGTATCGATGGAGTTAAGATTGTTTATGATCTCCATGTATGGGAGATAACAGTTGGG 1018
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1054 AAGCGAATCGATGGAGTTAAGATTGTTTATGATCTCCATGTATGGGAGATAACAGTAGGG 1113
Query 1019 AGAATCGTATTATCGTGTCATATCTTACCAGAGCCTGGAGCTAGTCCTAAAGAGATCATT 1078
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 AGAATCGTATTGTCCTGTCATATCTTACCAGAGCCTGGAGCTAGTCCTAAAGAGATCATT 1173
Query 1079 ATTGGTGTTAGAAATTTCTGTAGGAAATCTTGTGGGATTTATCATGTAACTGTTCAGGTT 1138
| |||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||
Sbjct 1174 ACTGGTGTTAGAAATTTCTGTAGGAAGTCTTATGGGATTTATCATGCAACTGTTCAGGTT 1233
Query 1139 GAATCAGAGTAGCTA-AAAGCAGAGAGTTTCTTTTGTATTGTT-GCTTAAGAACATCTTT 1196
||||||||||||| | ||| |||||||||||| |||||| || ||||||||||||||||
Sbjct 1234 GAATCAGAGTAGC-ACAAA--AGAGAGTTTCTTCTGTATTATTTGCTTAAGAACATCTTT 1290
Query 1197 AG 1198
||
Sbjct 1291 AG 1292
Score = 405 bits (219), Expect = 5e-112
Identities = 240/250 (96%), Gaps = 1/250 (0%)
Strand=Plus/Plus
Query 1 CTTAATTGCCTGTGTTCATGTCTTTATATCTCTAACCATAACATAAAATTCAAGATTTCT 60
|||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||
Sbjct 1 CTTAATTGCCTGTGTTCATGTCTTCATATCTCTAACCATAAGATAAAACTCAAGATTTCT 60
Query 61 GAAGAAGACAGTTCTGGAATTCATATACGTTTTGCCTCTCCATCTGATTCTCAGCTTATG 120
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGAGGACAGCTCTGGAATTCATATACGTTTTGCCTCTCCATCTGATTCTCAGCTTATG 120
Query 121 GAATTGGAGCAAATCTGCATTTTGAAACCCGATGATGACGAAGAAATGGAGTCACCATCA 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 GAATTGGAGCAAATCTGCATTTTGAAACCCGATGATGAGGAAGAAATGGAGTCACCATCA 180
Query 181 CCATCAAAAGACAGAGGAAATTTTAGGCGTGGTTCCTCTGTCTTGCGCGTTTACGAGACA 240
||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCATCGAAA-ACAGAGGAAAATTTAGGCGTGGTTCCTCTGTCTTGCGCGTTTACGAGACA 239
Query 241 AGAACAATGC 250
|||||| |||
Sbjct 240 AGAACATTGC 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58835038740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5