BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497486
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
AT2G12505.1 | Symbols: | transposable element gene | chr2:5096... 309 3e-83
AT2G01029.1 | Symbols: | transposable element gene | chr2:2846... 305 4e-82
AT2G21460.1 | Symbols: | transposable element gene | chr2:9188... 303 1e-81
AT3G31945.1 | Symbols: | transposable element gene | chr3:1294... 294 8e-79
AT2G01040.1 | Symbols: | transposable element gene | chr2:6543... 294 8e-79
AT2G12385.1 | Symbols: | transposable element gene | chr2:4991... 283 2e-75
AT3G33189.1 | Symbols: | transposable element gene | chr3:1402... 270 1e-71
AT4G08095.1 | Symbols: | transposable element gene | chr4:4998... 268 5e-71
AT5G32481.1 | Symbols: | transposable element gene | chr5:1210... 267 2e-70
AT5G32540.1 | Symbols: | transposable element gene | chr5:1219... 263 2e-69
AT4G08750.1 | Symbols: | transposable element gene | chr4:5580... 191 1e-47
AT5G31873.1 | Symbols: | transposable element gene | chr5:1174... 122 4e-27
AT3G30816.1 | Symbols: | transposable element gene | chr3:1251... 122 4e-27
AT4G04655.1 | Symbols: | transposable element gene | chr4:2357... 121 1e-26
AT4G05300.1 | Symbols: | transposable element gene | chr4:2705... 121 1e-26
AT1G54926.1 | Symbols: | transposable element gene | chr1:2047... 121 1e-26
AT4G08111.1 | Symbols: | transposable element gene | chr4:5055... 119 5e-26
AT2G06860.1 | Symbols: | transposable element gene | chr2:2766... 111 8e-24
AT4G00140.1 | Symbols: EDA34 | Calcium-binding EF-hand family p... 108 1e-22
AT4G08760.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 108 1e-22
AT5G28110.1 | Symbols: | transposable element gene | chr5:1010... 102 5e-21
AT5G28120.1 | Symbols: | transposable element gene | chr5:1011... 102 5e-21
AT4G06496.1 | Symbols: | transposable element gene | chr4:3136... 102 5e-21
AT2G12530.1 | Symbols: | transposable element gene | chr2:5106... 102 5e-21
AT1G41797.1 | Symbols: | transposable element gene | chr1:1556... 102 5e-21
AT5G29060.2 | Symbols: | transposable element gene | chr5:1112... 97.1 2e-19
AT3G47230.1 | Symbols: | transposable element gene | chr3:1739... 97.1 2e-19
AT3G45095.1 | Symbols: | transposable element gene | chr3:1649... 97.1 2e-19
AT2G12540.1 | Symbols: | transposable element gene | chr2:5108... 97.1 2e-19
AT3G47240.1 | Symbols: | transposable element gene | chr3:1739... 76.8 3e-13
> AT2G12505.1 | Symbols: | transposable element gene | chr2:5096038-5097359
FORWARD LENGTH=1035
Length=1035
Score = 309 bits (167), Expect = 3e-83
Identities = 210/230 (91%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 1 TCTTGGCTCATTGGTCCATCCGTCCTCCAAACGTACGCCCCTTCGGTTTCATGGTGGACG 60
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 16 TCTTGGCTTATTGGTCCATCCGTCCTCCAAACGTACGCCCCTTCGGTTCCATGGTGGACG 75
Query 61 ATC-AAGCCCTCGGCTTATCGAACCATCCATGTTTCCGATCCGGTCGTTTATCACTACGA 119
|| || |||| ||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 76 ATTGAA-CCCTTGGCTTATCGAACCATCCATGTTTCCGATCCGGTCGTTTA-C--TACGA 131
Query 120 CCGCCCACGGTCTACTAACCGTTTACCCGTACGGTCCATGGTGGTC-ATAACGCCTTCGG 178
||||||||||| ||||||||||||| |||| ||||| ||||||||| |||| || |||||
Sbjct 132 CCGCCCACGGTTTACTAACCGTTTATCCGTCCGGTCTATGGTGGTCGATAAAGCTTTCGG 191
Query 179 CTTACCGATCCATCCATGCGATCCGAACAATATCATTATCACACCCAAGG 228
|||| |||||||||||| |||||||||| ||||| |||||||||||||||
Sbjct 192 CTTATCGATCCATCCATACGATCCGAACTATATCCTTATCACACCCAAGG 241
Score = 99.0 bits (53), Expect = 7e-20
Identities = 91/107 (85%), Gaps = 11/107 (10%)
Strand=Plus/Plus
Query 653 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACA-CTTC-GG--G-G---CGAATGGGT 704
||||||||||||||||||||||||||||||||||| |||| || | | ||||||| |
Sbjct 702 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACAACTTCAGGATGTGGGGCGAATGGAT 761
Query 705 GTGTTTCCGAAAG-ATCACATCCGTTCGTTGCACCCTTCCGAAAGGT 750
| || ||||| | ||||||||||||| |||||||||| ||||||||
Sbjct 762 GC-TTCCCGAA-GCATCACATCCGTTCCTTGCACCCTTTCGAAAGGT 806
> AT2G01029.1 | Symbols: | transposable element gene | chr2:28465-38652
FORWARD LENGTH=10188
Length=10188
Score = 305 bits (165), Expect = 4e-82
Identities = 208/229 (91%), Gaps = 1/229 (0%)
Strand=Plus/Minus
Query 1 TCTTGGCTCATTGGTCCATCCGTCCTCCAAACGTACGCCCCTTCGGTTTCATGGTGGACG 60
|||||||| |||||||||| ||| |||||||||||||||||| ||| | |||||||||||
Sbjct 7417 TCTTGGCTTATTGGTCCATTCGTTCTCCAAACGTACGCCCCTCCGGCTACATGGTGGACG 7358
Query 61 ATCAAGCCCTCGGCTTATCGAACCATCCATGTTTCCGATCCGGTCGTTTATCACTACGAC 120
|| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 7357 ATTGAGCCCTCGGCTTATCGAACCATCCATGTTTCCGTTCCGGTCGTTTAACACTACGAC 7298
Query 121 CGCCCACGGTCTACTAACCGTTTACCCGTACGGTCCATGGTGGTC-ATAACGCCTTCGGC 179
|||||||||| |||||| ||||||||||| ||||||||||||||| |||| || ||||||
Sbjct 7297 CGCCCACGGTTTACTAATCGTTTACCCGTCCGGTCCATGGTGGTCGATAAAGCTTTCGGC 7238
Query 180 TTACCGATCCATCCATGCGATCCGAACAATATCATTATCACACCCAAGG 228
||| |||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct 7237 TTAATGATCCATCCATGCGGTCCGAACGATATCCTTATCACACCCAAGG 7189
Score = 300 bits (162), Expect = 2e-80
Identities = 207/229 (90%), Gaps = 1/229 (0%)
Strand=Plus/Minus
Query 1 TCTTGGCTCATTGGTCCATCCGTCCTCCAAACGTACGCCCCTTCGGTTTCATGGTGGACG 60
|||||||| |||||||||| ||| |||||||||||||||||| ||| | |||||||||||
Sbjct 4483 TCTTGGCTTATTGGTCCATTCGTTCTCCAAACGTACGCCCCTCCGGCTACATGGTGGACG 4424
Query 61 ATCAAGCCCTCGGCTTATCGAACCATCCATGTTTCCGATCCGGTCGTTTATCACTACGAC 120
|| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 4423 ATTGAGCCCTCGGCTTATCGAACCATCCATGTTTCCGTTCCGGTCGTTTAACACTACGAC 4364
Query 121 CGCCCACGGTCTACTAACCGTTTACCCGTACGGTCCATGGTGGTC-ATAACGCCTTCGGC 179
|||||||||| |||||| ||||||||||| | ||||||||||||| |||| || ||||||
Sbjct 4363 CGCCCACGGTTTACTAATCGTTTACCCGTCCAGTCCATGGTGGTCGATAAAGCTTTCGGC 4304
Query 180 TTACCGATCCATCCATGCGATCCGAACAATATCATTATCACACCCAAGG 228
||| |||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct 4303 TTAATGATCCATCCATGCGGTCCGAACGATATCCTTATCACACCCAAGG 4255
Score = 126 bits (68), Expect = 3e-28
Identities = 86/94 (91%), Gaps = 4/94 (4%)
Strand=Plus/Minus
Query 228 GCCCATGAAATCATTT-GTCCGTCGGCCTTTGGTTTGCTCGCGGGTCCAACATCCGTTTT 286
|||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 4219 GCCCATGAAATC-TTTCTTCCGTCGGCCTTAGGTTTGCTCGCGGGTCCAACATCCGTTTT 4161
Query 287 GTCCACT-AGTTCTCACCGTGGACTTTCCCGTTG 319
||||| | |||| ||||||||||||||||||||
Sbjct 4160 GTCCA-TCGGTTCCCACCGTGGACTTTCCCGTTG 4128
Score = 126 bits (68), Expect = 3e-28
Identities = 86/94 (91%), Gaps = 4/94 (4%)
Strand=Plus/Minus
Query 228 GCCCATGAAATCATTT-GTCCGTCGGCCTTTGGTTTGCTCGCGGGTCCAACATCCGTTTT 286
|||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 7153 GCCCATGAAATC-TTTCTTCCGTCGGCCTTAGGTTTGCTCGCGGGTCCAACATCCGTTTT 7095
Query 287 GTCCACT-AGTTCTCACCGTGGACTTTCCCGTTG 319
||||| | |||| ||||||||||||||||||||
Sbjct 7094 GTCCA-TCGGTTCCCACCGTGGACTTTCCCGTTG 7062
Score = 108 bits (58), Expect = 1e-22
Identities = 66/70 (94%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 319 GATTGCATCCATGGGCGACCCTTGGGTGTGTTCGGTTGCACTTATCCTCGTGCTTCTTCG 378
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 3975 GATTGCATCCATGGGCGACCCTTGGGTGTGTTCGGATGCACTTATCCTTGTGCTTCCTCG 3916
Query 379 AACACCTTTC 388
||||| ||||
Sbjct 3915 AACACTTTTC 3906
Score = 108 bits (58), Expect = 1e-22
Identities = 66/70 (94%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 319 GATTGCATCCATGGGCGACCCTTGGGTGTGTTCGGTTGCACTTATCCTCGTGCTTCTTCG 378
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 6909 GATTGCATCCATGGGCGACCCTTGGGTGTGTTCGGATGCACTTATCCTTGTGCTTCCTCG 6850
Query 379 AACACCTTTC 388
||||| ||||
Sbjct 6849 AACACTTTTC 6840
Score = 97.1 bits (52), Expect = 2e-19
Identities = 60/64 (94%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 561 TCCGTCCTATACATTCCATCGAACCGTTGGATCGGGAGGTAGCATGCGCATCAGTTCGGT 620
||| |||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3708 TCCATCCTCTACACTCCATCGAACCGTTGGACCGGGAGGTAGCATGCGCATCAGTTCGGT 3649
Query 621 CGAG 624
||||
Sbjct 3648 CGAG 3645
Score = 91.6 bits (49), Expect = 1e-17
Identities = 59/64 (92%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 561 TCCGTCCTATACATTCCATCGAACCGTTGGATCGGGAGGTAGCATGCGCATCAGTTCGGT 620
||| |||| |||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 6642 TCCATCCTCTACACTCCATCGAACCCTTGGACCGGGAGGTAGCATGCGCATCAGTTCGGT 6583
Query 621 CGAG 624
||||
Sbjct 6582 CGAG 6579
Score = 65.8 bits (35), Expect = 7e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Minus
Query 653 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACA 687
|||||||||||||||||||||||||||||||||||
Sbjct 3642 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACA 3608
Score = 65.8 bits (35), Expect = 7e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Minus
Query 653 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACA 687
|||||||||||||||||||||||||||||||||||
Sbjct 6576 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACA 6542
> AT2G21460.1 | Symbols: | transposable element gene | chr2:9188338-9194491
REVERSE LENGTH=6154
Length=6154
Score = 303 bits (164), Expect = 1e-81
Identities = 217/243 (89%), Gaps = 2/243 (1%)
Strand=Plus/Minus
Query 1 TCTTGGCTCATTGGTCCATCCGTCCTCCAAACGTACGCCCCTTCGGTTTCATGGTGGACG 60
|||||||| |||||||||| ||| |||||||||||||||||| ||| | |||||||||||
Sbjct 2280 TCTTGGCTTATTGGTCCATTCGTTCTCCAAACGTACGCCCCTCCGGCTACATGGTGGACG 2221
Query 61 ATCAAGCCCTCGGCTTATCGAACCATCCATGTTTCCGATCCGGTCGTTTATCACTACGAC 120
|| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 2220 ATTGAGCCCTCGGCTTATCGAACCATCCATGTTTCCGTTCCGGTCGTTTAACACTACGAC 2161
Query 121 CGCCCACGGTCTACTAACCGTTTACCCGTACGGTCCATGGTGGTC-ATAACGCCTTCGGC 179
|||||||||| |||||||||||||||||| ||||||||||||||| |||| || ||| ||
Sbjct 2160 CGCCCACGGTTTACTAACCGTTTACCCGTTCGGTCCATGGTGGTCGATAAAGCTTTCAGC 2101
Query 180 TTACCGATCCATCCATGCGATCCGAACAATATCATTATCACACCCAA-GGCCCATGAAAT 238
||| |||||||||||||| ||||||| ||||| ||||||||||||| || || || | |
Sbjct 2100 TTAATGATCCATCCATGCGGTCCGAACGATATCCTTATCACACCCAACGGTCCGTGGATT 2041
Query 239 CAT 241
|||
Sbjct 2040 CAT 2038
Score = 108 bits (58), Expect = 1e-22
Identities = 66/70 (94%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 319 GATTGCATCCATGGGCGACCCTTGGGTGTGTTCGGTTGCACTTATCCTCGTGCTTCTTCG 378
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 1772 GATTGCATCCATGGGCGACCCTTGGGTGTGTTCGGATGCACTTATCCTTGTGCTTCCTCG 1713
Query 379 AACACCTTTC 388
||||| ||||
Sbjct 1712 AACACTTTTC 1703
Score = 65.8 bits (35), Expect = 7e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Minus
Query 653 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACA 687
|||||||||||||||||||||||||||||||||||
Sbjct 1439 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACA 1405
> AT3G31945.1 | Symbols: | transposable element gene | chr3:12942324-12949134
REVERSE LENGTH=6811
Length=6811
Score = 294 bits (159), Expect = 8e-79
Identities = 206/229 (90%), Gaps = 1/229 (0%)
Strand=Plus/Minus
Query 1 TCTTGGCTCATTGGTCCATCCGTCCTCCAAACGTACGCCCCTTCGGTTTCATGGTGGACG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1121 TCTTGGCTCATTGGTCCATCCGTCCTCCAAACGTACGCCCCTTCGGTTTCATGGTGCTCG 1062
Query 61 ATCAAGCCCTCGGCTTATCGAACCATCCATGTTTCCGATCCGGTCGTTTATCACTACGAC 120
|| |||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1061 ATTGAGCCCTCGACTTATCGAACCATCCATATTTCCGATCCGGTCGTTTAACACTACGAC 1002
Query 121 CGCCCACGGTCTACTAACCGTTTACCCGTACGGTCCATGGTGGTCA-TAACGCCTTCGGC 179
||||||| || |||||||| ||||||| ||||||||||||||| ||| | ||||||
Sbjct 1001 CGCCCACAGTTTACTAACCACATACCCGTCCGGTCCATGGTGGTCTGTAAATCTTTCGGC 942
Query 180 TTACCGATCCATCCATGCGATCCGAACAATATCATTATCACACCCAAGG 228
||| |||||||||||| ||||||||| || ||||||||||||||||||
Sbjct 941 TTATCGATCCATCCATACGATCCGAATGATTTCATTATCACACCCAAGG 893
Score = 89.8 bits (48), Expect = 4e-17
Identities = 56/60 (93%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 565 TCCTATACATTCCATCGAACCGTTGGATCGGGAGGTAGCATGCGCATCAGTTCGGTCGAG 624
|||| |||| ||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 320 TCCTCTACACTCCATCGAACCGTTGGACCGGGAGGTAGCATGCGCATCAGTTCGGTTGAG 261
> AT2G01040.1 | Symbols: | transposable element gene | chr2:65436-67139
REVERSE LENGTH=1704
Length=1704
Score = 294 bits (159), Expect = 8e-79
Identities = 206/229 (90%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 1 TCTTGGCTCATTGGTCCATCCGTCCTCCAAACGTACGCCCCTTCGGTTTCATGGTGGACG 60
|||||||| |||||||||| ||| |||||||||||||||||| ||| | |||||||||||
Sbjct 1505 TCTTGGCTTATTGGTCCATTCGTTCTCCAAACGTACGCCCCTCCGGCTACATGGTGGACG 1446
Query 61 ATCAAGCCCTCGGCTTATCGAACCATCCATGTTTCCGATCCGGTCGTTTATCACTACGAC 120
|| ||||||||||||||||||||||||||||||||| | |||||||||| |||||||||
Sbjct 1445 ATTGAGCCCTCGGCTTATCGAACCATCCATGTTTCCGTTTCGGTCGTTTAACACTACGAC 1386
Query 121 CGCCCACGGTCTACTAACCGTTTACCCGTACGGTCCATGGTGGTC-ATAACGCCTTCGGC 179
|||||| ||| |||||||||||||||||| ||||||||||||||| |||| || |||||
Sbjct 1385 CGCCCATGGT-TACTAACCGTTTACCCGTCCGGTCCATGGTGGTCGATAAAGCTTTCGGT 1327
Query 180 TTACCGATCCATCCATGCGATCCGAACAATATCATTATCACACCCAAGG 228
||| |||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct 1326 TTAATGATCCATCCATGCGGTCCGAACGATATCCTTATCACACCCAAGG 1278
Score = 126 bits (68), Expect = 3e-28
Identities = 86/94 (91%), Gaps = 4/94 (4%)
Strand=Plus/Minus
Query 228 GCCCATGAAATCATTT-GTCCGTCGGCCTTTGGTTTGCTCGCGGGTCCAACATCCGTTTT 286
|||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1242 GCCCATGAAATC-TTTCTTCCGTCGGCCTTAGGTTTGCTCGCGGGTCCAACATCCGTTTT 1184
Query 287 GTCCACT-AGTTCTCACCGTGGACTTTCCCGTTG 319
||||| | |||| ||||||||||||||||||||
Sbjct 1183 GTCCA-TCGGTTCCCACCGTGGACTTTCCCGTTG 1151
Score = 97.1 bits (52), Expect = 2e-19
Identities = 60/64 (94%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 561 TCCGTCCTATACATTCCATCGAACCGTTGGATCGGGAGGTAGCATGCGCATCAGTTCGGT 620
||| |||| |||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 731 TCCATCCTCTACACTCCATCGAACCGTTGGATTGGGAGGTAGCATGCGCATCAGTTCGGT 672
Query 621 CGAG 624
||||
Sbjct 671 CGAG 668
> AT2G12385.1 | Symbols: | transposable element gene | chr2:4991988-4995221
REVERSE LENGTH=3234
Length=3234
Score = 283 bits (153), Expect = 2e-75
Identities = 204/229 (89%), Gaps = 1/229 (0%)
Strand=Plus/Minus
Query 1 TCTTGGCTCATTGGTCCATCCGTCCTCCAAACGTACGCCCCTTCGGTTTCATGGTGGACG 60
||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2872 TCTAGGCTTATTGGTCCATCCGTCCTCCAAACGTACGCCCCTTGGGTTTCATGGTGGACG 2813
Query 61 ATCAAGCCCTCGGCTTATCGAACCATCCATGTTTCCGATCCGGTCGTTTATCACTACGAC 120
|| ||||||| |||||||||||||||||| |||||||| |||||||||| |||||||||
Sbjct 2812 ATTGAGCCCTCAGCTTATCGAACCATCCATTTTTCCGATTCGGTCGTTTAACACTACGAC 2753
Query 121 CGCCCACGGTCTACTAACCGTTTACCCGTACGGTCCATGGTGGTCA-TAACGCCTTCGGC 179
|||||| || |||||||| ||||||||| ||||||||||||||| ||| | || |||
Sbjct 2752 TGCCCACAGTTTACTAACCATTTACCCGTCCGGTCCATGGTGGTCGGTAAAACTTTTGGC 2693
Query 180 TTACCGATCCATCCATGCGATCCGAACAATATCATTATCACACCCAAGG 228
||| |||||||||||| |||||||||| ||||| ||||||||| |||||
Sbjct 2692 TTATCGATCCATCCATACGATCCGAACGATATCCTTATCACACACAAGG 2644
Score = 115 bits (62), Expect = 7e-25
Identities = 79/87 (91%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 320 ATTGCATCCATGGGCGACCCTTGGGTGTGTTCGGTTGCACTTATCCTCGTGCTTCTTCGA 379
|||||||||||||||||||||||||||||||||| |||||||||| | ||||||| ||||
Sbjct 2359 ATTGCATCCATGGGCGACCCTTGGGTGTGTTCGGATGCACTTATCTTTGTGCTTCCTCGA 2300
Query 380 ACACCTTTCCCTTATACGCCT-TCCCG 405
||||||||||| || ||||| |||||
Sbjct 2299 ACACCTTTCCCG-ATCCGCCTATCCCG 2274
> AT3G33189.1 | Symbols: | transposable element gene | chr3:14028344-14029295
FORWARD LENGTH=952
Length=952
Score = 270 bits (146), Expect = 1e-71
Identities = 202/229 (88%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 1 TCTTGGCTCATTGGTCCATCCGTCCTCCAAACGTACGCCCCTTCGGTTTCATGGTGGACG 60
|||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 748 TCTTGGCTTATTGGTCCATCCGTCCTCCAAACGTACTCCCCTTCGGTTCCATGGTGGACG 689
Query 61 ATCAAGCCCTCGGCTTATCGAACCATCCATGTTTCCGATCCGGTCGTTTATCACTACGAC 120
|| |||||| ||||||||||||||||||||||||||||| | || |||| | ||||||
Sbjct 688 ATTGAGCCCTTGGCTTATCGAACCATCCATGTTTCCGATCTGTTCATTTA-C--TACGAC 632
Query 121 CGCCCACGGTCTACTAACCGTTTACCCGTACGGTCCATGGTGGTC-ATAACGCCTTCGGC 179
|||||| ||| |||||||| |||| |||| ||||| ||||||||| |||| || ||||||
Sbjct 631 CGCCCATGGTTTACTAACCATTTATCCGTCCGGTCTATGGTGGTCGATAAAGCTTTCGGC 572
Query 180 TTACCGATCCATCCATGCGATCCGAACAATATCATTATCACACCCAAGG 228
||| ||||||||||| ||||| |||| ||||| |||||||||||||||
Sbjct 571 TTATTGATCCATCCATACGATCTGAACTATATCCTTATCACACCCAAGG 523
> AT4G08095.1 | Symbols: | transposable element gene | chr4:4998060-5001542
REVERSE LENGTH=3483
Length=3483
Score = 268 bits (145), Expect = 5e-71
Identities = 212/244 (87%), Gaps = 5/244 (2%)
Strand=Plus/Minus
Query 1 TCTTGGCTCATTGGTCCATCCGTCCTCCAAACGTACGCCCCTTCGGTTTCATGGTGGACG 60
||||| || ||||||||||| |||||||||| ||||| ||||||||||| ||||||||||
Sbjct 1361 TCTTGACTTATTGGTCCATCTGTCCTCCAAATGTACGTCCCTTCGGTTTAATGGTGGACG 1302
Query 61 ATCAAGCCCTCGGCTTATCGAACCATCCATGTTTCCGATCCGGTCGTTTATCACTACGAC 120
||| || | |||||||||||||||||||||||||||||||||||| |||| |||||| ||
Sbjct 1301 ATCGAGGCTTCGGCTTATCGAACCATCCATGTTTCCGATCCGGTCCTTTAACACTACAAC 1242
Query 121 CGCCCACGGTCTACTAACCGTTTACCCGTACGGTCCATGGTGGTCAT-AACGCCTTC-GG 178
|||||| ||| ||||||||||| ||||||| |||||||||||||| | || || ||| ||
Sbjct 1241 CGCCCATGGTTTACTAACCGTT-ACCCGTATGGTCCATGGTGGTCGTTAAAGC-TTCCGG 1184
Query 179 CTTACCGATCCATCCATGCGATCCGAACAATATCATTATCACACCCAAGG-CCCATGAAA 237
||| |||||||||||| | |||||||| ||||| |||||||||| |||| ||| || |
Sbjct 1183 TTTATCGATCCATCCATACAATCCGAACGATATCCTTATCACACCTAAGGGCCCGTGGAC 1124
Query 238 TCAT 241
||||
Sbjct 1123 TCAT 1120
> AT5G32481.1 | Symbols: | transposable element gene | chr5:12106066-12110796
REVERSE LENGTH=4731
Length=4731
Score = 267 bits (144), Expect = 2e-70
Identities = 203/231 (88%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 1 TCTTGGCTCATTGGTCCATCCGTCCTCCAAACGTACGCCCCTTCGG-TTTCATGGTGGAC 59
|||||||| |||||||||||||| |||||||||||||||||| ||| | | |||||||||
Sbjct 2002 TCTTGGCTTATTGGTCCATCCGTTCTCCAAACGTACGCCCCTCCGGCTAT-ATGGTGGAC 1944
Query 60 GATCAAGCCCTCGGCTTATCGAACCATCCATGTTTCCGATCCGGTCGTTTATCACTACGA 119
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1943 GATTGAGCCCTCGGCTTATCGAACCATCCATGTTTCCGATCCGGTCGTTTAACACTACGA 1884
Query 120 CCGCCCACGGTCTACTAACCGTTTACCCGTACGGTCCATGGTGGTC-ATAACGCCTTCGG 178
||||||||||| ||| |||||||||||| | || ||||||||||| |||| || ||||
Sbjct 1883 CCGCCCACGGTTTACCAACCGTTTACCCATCCGATCCATGGTGGTTGATAAAGCTTTCG- 1825
Query 179 CTTACCGATCCATCCATGCGATCCGAACAATAT-CATTATCACACCCAAGG 228
|||| |||||||| ||||| || |||| |||| | |||||| ||||||||
Sbjct 1824 CTTAATGATCCATCTATGCGGTCTGAACGATATTC-TTATCATACCCAAGG 1775
Score = 113 bits (61), Expect = 2e-24
Identities = 84/94 (89%), Gaps = 6/94 (6%)
Strand=Plus/Minus
Query 229 CCCATGAAATCATTT-GTCCGTCGGCCTTTGGTTTGCTCGCGGGTCCAACATCCGTTTTG 287
||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1738 CCCATGAAATC-TTTCTTCCGTCGGCCTTAGGTTTGCTCGCGGGTCCAACATCCGTTTTG 1680
Query 288 TCCACTAG-TTCTC-ACCGTGGACTTTCCCGTTG 319
|||| | | || || |||||||||||||| ||||
Sbjct 1679 TCCA-TCGGTT-TCCACCGTGGACTTTCCAGTTG 1648
Score = 73.1 bits (39), Expect = 4e-12
Identities = 42/43 (98%), Gaps = 1/43 (2%)
Strand=Plus/Minus
Query 653 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACA-CTTCGGG 694
||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1156 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACAACTTCGGG 1114
> AT5G32540.1 | Symbols: | transposable element gene | chr5:12195731-12199558
FORWARD LENGTH=3828
Length=3828
Score = 263 bits (142), Expect = 2e-69
Identities = 211/244 (86%), Gaps = 5/244 (2%)
Strand=Plus/Minus
Query 1 TCTTGGCTCATTGGTCCATCCGTCCTCCAAACGTACGCCCCTTCGGTTTCATGGTGGACG 60
|||||||| |||||||||| || ||||||||||||| |||| ||| |||||||||||||
Sbjct 2573 TCTTGGCTTATTGGTCCATGTGTTCTCCAAACGTACG-CCCTCCGGCTTCATGGTGGACG 2515
Query 61 ATCAAGCCCTCGGCTTATCGAACCATCCATGTTTCCGATCCGGTCGTTTATCACTACGAC 120
|| |||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 2514 ATTGAGCCCTTGGCTTATCGAACCATCCATGTTTCCGATCTGGTCGTTTAACACTACGAC 2455
Query 121 CGCCCACGGTCTACTAACCGTTTACCCGTACGGTCCATGGTGGTCA-TAACGCCTTCGGC 179
|||||||||| | |||||||||||||||| ||||||||||||||| ||| || |||| |
Sbjct 2454 CGCCCACGGTTTTCTAACCGTTTACCCGTCCGGTCCATGGTGGTCGGTAAAGCTTTCGAC 2395
Query 180 TTACCGATCCATCCATGCGATCCGAACAATAT-CATTATCACACCCAAGGC-CCATGAAA 237
||| ||| |||||||| | ||| ||| ||||| | |||||||||| |||| || ||||
Sbjct 2394 TTATCGAGCCATCCATACAATCGGAATAATATTC-TTATCACACCAAAGGGTCCGTGAAT 2336
Query 238 TCAT 241
||||
Sbjct 2335 TCAT 2332
Score = 108 bits (58), Expect = 1e-22
Identities = 83/94 (88%), Gaps = 5/94 (5%)
Strand=Plus/Minus
Query 228 GCCCATGAAATCATT-TGTCCGTCGGCCTTTGGTTTGCTCGCGGGTCCAACATCCGTTTT 286
||| |||||||| || | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 2310 GCCGATGAAATCCTTCT-TCCGTCGGCCTTAGGTTTGCTCGCGGGTCCAACATCCGTTTT 2252
Query 287 GTCCACTAG-TTCTCACCGTGGACTTTCCCGTTG 319
||||| | | || ||| ||| |||||||||||||
Sbjct 2251 GTCCA-TCGGTT-TCAACGTAGACTTTCCCGTTG 2220
Score = 62.1 bits (33), Expect = 9e-09
Identities = 38/40 (95%), Gaps = 1/40 (3%)
Strand=Plus/Minus
Query 653 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACA-CTTC 691
||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1726 ATATTCGCCGAGCCGCACCCCCTTTCCGACCAACAACTTC 1687
> AT4G08750.1 | Symbols: | transposable element gene | chr4:5580236-5583144
REVERSE LENGTH=1386
Length=1386
Score = 191 bits (103), Expect = 1e-47
Identities = 127/139 (91%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 1 TCTTGGCTCATTGGTCCATCCGTCCTCCAAACGTACGCCCCTTCGGTTTCATGGTGGACG 60
|||||||| |||||||||| ||| |||||||||||||||||| ||| | |||||||||||
Sbjct 117 TCTTGGCTTATTGGTCCATTCGTTCTCCAAACGTACGCCCCTCCGGCTACATGGTGGACG 176
Query 61 ATCAAGCCCTCGGCTTATCGAACCATCCATGTTTCCGATCCGGTCGTTTATCACTACGAC 120
|| |||| |||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 177 ATTGAGCCATCGGCTTATCGAACCATCCATGTTTCCGTTCCGGTCGTTTAACACTACGAC 236
Query 121 CGCCCACGGTCTACTAACC 139
|||||||||| ||||||||
Sbjct 237 CGCCCACGGTTTACTAACC 255
> AT5G31873.1 | Symbols: | transposable element gene | chr5:11746240-11747771
FORWARD LENGTH=816
Length=816
Score = 122 bits (66), Expect = 4e-27
Identities = 84/92 (91%), Gaps = 4/92 (4%)
Strand=Plus/Minus
Query 228 GCCCATGAAATCATTT-GTCCGTCGGCCTTTGGTTTGCTCGCGGGTCCAACATCCGTTTT 286
|||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 643 GCCCATGAAATC-TTTCTTCCGTCGGCCTTAGGTTTGCTCGCGGGTCCAACATCCGTTTT 585
Query 287 GTCCACTAG-TTCTCACCGTGGACTTTCCCGT 317
||||| | | ||| ||||||||||||||||||
Sbjct 584 GTCCA-TCGGTTCCCACCGTGGACTTTCCCGT 554
Score = 91.6 bits (49), Expect = 1e-17
Identities = 59/64 (92%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 561 TCCGTCCTATACATTCCATCGAACCGTTGGATCGGGAGGTAGCATGCGCATCAGTTCGGT 620
||| |||| |||| ||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 273 TCCATCCTCTACACTCCATCGAACCGTTGGACCGGAAGGTAGCATGCGCATCAGTTCGGT 214
Query 621 CGAG 624
||||
Sbjct 213 CGAG 210
> AT3G30816.1 | Symbols: | transposable element gene | chr3:12511659-12513384
FORWARD LENGTH=1029
Length=1029
Score = 122 bits (66), Expect = 4e-27
Identities = 93/105 (89%), Gaps = 6/105 (6%)
Strand=Plus/Minus
Query 228 GCCCATGAAATCATTT-GTCCGTCGGCCTTTGGTTTGCTCGCGGGTCCAACATCCGTTTT 286
|||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 748 GCCCATGAAATC-TTTCTTCCGTCGGCCTTAGGTTTGCTCGCGGGTCCAACATCCGTTTT 690
Query 287 GTCCACTAG-TTCTCACCGTGGACTTTCCCGTTGATTGCATCCAT 330
||||| | | ||| ||| |||||||||||||||| || ||||||
Sbjct 689 GTCCA-TCGGTTCCCACGGTGGACTTTCCCGTTGGTT--ATCCAT 648
Score = 108 bits (58), Expect = 1e-22
Identities = 66/70 (94%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 319 GATTGCATCCATGGGCGACCCTTGGGTGTGTTCGGTTGCACTTATCCTCGTGCTTCTTCG 378
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 606 GATTGCATCCATGGGCGACCCTTGGGTGTGTTCGGATGCACTTATCCTTGTGCTTCCTCG 547
Query 379 AACACCTTTC 388
||||| ||||
Sbjct 546 AACACTTTTC 537
Score = 65.8 bits (35), Expect = 7e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Minus
Query 653 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACA 687
|||||||||||||||||||||||||||||||||||
Sbjct 360 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACA 326
> AT4G04655.1 | Symbols: | transposable element gene | chr4:2357418-2364944
FORWARD LENGTH=7527
Length=7527
Score = 121 bits (65), Expect = 1e-26
Identities = 85/94 (90%), Gaps = 4/94 (4%)
Strand=Plus/Plus
Query 228 GCCCATGAAATCATTT-GTCCGTCGGCCTTTGGTTTGCTCGCGGGTCCAACATCCGTTTT 286
|||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 4743 GCCCATGAAATC-TTTCTTCCGTCGGCCTTAGGTTTGCTCGCGGGTCCAACATCCGTTTT 4801
Query 287 GTCCACT-AGTTCTCACCGTGGACTTTCCCGTTG 319
|| || | |||| ||||||||||||||||||||
Sbjct 4802 GTTCA-TCGGTTCCCACCGTGGACTTTCCCGTTG 4834
Score = 108 bits (58), Expect = 1e-22
Identities = 66/70 (94%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 319 GATTGCATCCATGGGCGACCCTTGGGTGTGTTCGGTTGCACTTATCCTCGTGCTTCTTCG 378
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 4987 GATTGCATCCATGGGCGACCCTTGGGTGTGTTCGGATGCACTTATCCTTGTGCTTCCTCG 5046
Query 379 AACACCTTTC 388
||||| ||||
Sbjct 5047 AACACTTTTC 5056
Score = 97.1 bits (52), Expect = 2e-19
Identities = 60/64 (94%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 561 TCCGTCCTATACATTCCATCGAACCGTTGGATCGGGAGGTAGCATGCGCATCAGTTCGGT 620
||| |||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 5254 TCCATCCTCTACACTCCATCGAACCGTTGGACCGGGAGGTAGCATGCGCATCAGTTCGGT 5313
Query 621 CGAG 624
||||
Sbjct 5314 CGAG 5317
Score = 65.8 bits (35), Expect = 7e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 653 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACA 687
|||||||||||||||||||||||||||||||||||
Sbjct 5320 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACA 5354
> AT4G05300.1 | Symbols: | transposable element gene | chr4:2705670-2708158
FORWARD LENGTH=1164
Length=1164
Score = 121 bits (65), Expect = 1e-26
Identities = 85/94 (90%), Gaps = 4/94 (4%)
Strand=Plus/Minus
Query 228 GCCCATGAAATCATTT-GTCCGTCGGCCTTTGGTTTGCTCGCGGGTCCAACATCCGTTTT 286
|||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1151 GCCCATGAAATC-TTTCTTCCGTCGGCCTTAGGTTTGCTCGCGGGTCCAACATCCGTTTT 1093
Query 287 GTCCACTAG-TTCTCACCGTGGACTTTCCCGTTG 319
||||| | | ||| |||||| |||||||||||||
Sbjct 1092 GTCCA-TCGGTTCCCACCGTAGACTTTCCCGTTG 1060
Score = 102 bits (55), Expect = 5e-21
Identities = 65/70 (93%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 319 GATTGCATCCATGGGCGACCCTTGGGTGTGTTCGGTTGCACTTATCCTCGTGCTTCTTCG 378
|||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| |||
Sbjct 972 GATTGCATCCATGGGCGACCCTTGGGTGTGCTCGGATGCACTTATCCTTGTGCTTCCTCG 913
Query 379 AACACCTTTC 388
||||| ||||
Sbjct 912 AACACTTTTC 903
> AT1G54926.1 | Symbols: | transposable element gene | chr1:20476624-20477773
REVERSE LENGTH=822
Length=822
Score = 121 bits (65), Expect = 1e-26
Identities = 85/94 (90%), Gaps = 4/94 (4%)
Strand=Plus/Minus
Query 228 GCCCATGAAATCATTT-GTCCGTCGGCCTTTGGTTTGCTCGCGGGTCCAACATCCGTTTT 286
|||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 809 GCCCATGAAATC-TTTCTTCCGTCGGCCTTAGGTTTGCTCGCGGGTCCAACATCCGTTTT 751
Query 287 GTCCACTAG-TTCTCACCGTGGACTTTCCCGTTG 319
||||| | | ||| ||| ||||||||||||||||
Sbjct 750 GTCCA-TCGGTTCCCACAGTGGACTTTCCCGTTG 718
Score = 69.4 bits (37), Expect = 5e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Minus
Query 585 CGTTGGATCGGGAGGTAGCATGCGCATCAGTTCGGTCGAG 624
||||||| ||||||||||||||||||||||||||||||||
Sbjct 366 CGTTGGACCGGGAGGTAGCATGCGCATCAGTTCGGTCGAG 327
Score = 65.8 bits (35), Expect = 7e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Minus
Query 653 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACA 687
|||||||||||||||||||||||||||||||||||
Sbjct 324 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACA 290
> AT4G08111.1 | Symbols: | transposable element gene | chr4:5055667-5057174
REVERSE LENGTH=690
Length=690
Score = 119 bits (64), Expect = 5e-26
Identities = 82/90 (91%), Gaps = 4/90 (4%)
Strand=Plus/Minus
Query 228 GCCCATGAAATCATTT-GTCCGTCGGCCTTTGGTTTGCTCGCGGGTCCAACATCCGTTTT 286
|||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 148 GCCCATGAAATC-TTTCTTCCGTCGGCCTTAGGTTTGCTCGCGGGTCCAACATCCGTTTT 90
Query 287 GTCCACTAG-TTCTCACCGTGGACTTTCCC 315
||||| | | ||| ||||||||||||||||
Sbjct 89 GTCCA-TCGGTTCCCACCGTGGACTTTCCC 61
> AT2G06860.1 | Symbols: | transposable element gene | chr2:2766356-2772445
FORWARD LENGTH=2817
Length=2817
Score = 111 bits (60), Expect = 8e-24
Identities = 231/306 (75%), Gaps = 41/306 (13%)
Strand=Plus/Minus
Query 114 CTACGACCGCCCACGGTCTACTAACCGTTTACCCGTACGGTCCATGGTGGTC-ATAACGC 172
||| ||||||||| ||| |||||||| |||| || | ||||||||||||||| ||| |
Sbjct 2817 CTATGACCGCCCATGGTTTACTAACCATTTAGCCATCCGGTCCATGGTGGTCGGTAAAG- 2759
Query 173 CT-TCGGCTTACCGATCCATCCATGCGATCCGAACAATA-TCATTATCACACCCAAGGCC 230
|| || ||||| | |||||||||| |||||||||| ||| || || ||||||| ||||
Sbjct 2758 CTCTCAGCTTATCAATCCATCCATACGATCCGAACGATATTC-TTTTCACACCTAAGGGT 2700
Query 231 CAT-GA-AATCAT-TT-G---TCCGTCG-G----CCTTTGGT-TT---G--CT-CG--CG 269
| | || || | || | ||||||| | |||||||| || | || || ||
Sbjct 2699 CGTGGACTTTCCTGTTGGTTATCCGTCGAGTCACCCTTTGGTCTTACCGATCTCCGATCG 2640
Query 270 GGTCCAACAT--CCGTT-TT-GTCCACTAGTTCTCACCGTGGACTTTCCCGT-TGATTGC 324
| | || ||| || || || || || ||||| || | || || || ||||||
Sbjct 2639 GTTTCACCATGGCCATTCTTGGT--GCT--TTCTC-CC-T----TTACCGGTAAGATTGC 2590
Query 325 ATCCATGGGCGACCCTTGGGTGTGTTCGGTTGCACTTATCCTCGTGCTTCTTCGAACACC 384
||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||
Sbjct 2589 ATCCATGGGCGACCCTTGGGTGTGTTCGGATGCACTTATCCTTGTGCTTCCTCGAACACT 2530
Query 385 TTTCCC 390
||||||
Sbjct 2529 TTTCCC 2524
> AT4G00140.1 | Symbols: EDA34 | Calcium-binding EF-hand family
protein | chr4:51166-53449 REVERSE LENGTH=774
Length=774
Score = 108 bits (58), Expect = 1e-22
Identities = 66/70 (94%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 319 GATTGCATCCATGGGCGACCCTTGGGTGTGTTCGGTTGCACTTATCCTCGTGCTTCTTCG 378
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 601 GATTGCATCCATGGGCGACCCTTGGGTGTGTTCGGATGCACTTATCCTTGTGCTTCCTCG 542
Query 379 AACACCTTTC 388
||||| ||||
Sbjct 541 AACACTTTTC 532
> AT4G08760.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: nucleolin like 1 (TAIR:AT1G48920.1); Has 36 Blast hits
to 36 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:5584739-5591133 REVERSE
LENGTH=1566
Length=1566
Score = 108 bits (58), Expect = 1e-22
Identities = 66/70 (94%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 319 GATTGCATCCATGGGCGACCCTTGGGTGTGTTCGGTTGCACTTATCCTCGTGCTTCTTCG 378
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 969 GATTGCATCCATGGGCGACCCTTGGGTGTGTTCGGATGCACTTATCCTTGTGCTTCCTCG 1028
Query 379 AACACCTTTC 388
||||| ||||
Sbjct 1029 AACACTTTTC 1038
> AT5G28110.1 | Symbols: | transposable element gene | chr5:10108331-10111154
FORWARD LENGTH=1482
Length=1482
Score = 102 bits (55), Expect = 5e-21
Identities = 61/64 (95%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 561 TCCGTCCTATACATTCCATCGAACCGTTGGATCGGGAGGTAGCATGCGCATCAGTTCGGT 620
||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 TCCATCCTCTACACTCCATCGAACCGTTGGATCGGGAGGTAGCATGCGCATCAGTTCGGT 808
Query 621 CGAG 624
||||
Sbjct 807 CGAG 804
> AT5G28120.1 | Symbols: | transposable element gene | chr5:10111393-10114354
FORWARD LENGTH=1521
Length=1521
Score = 102 bits (55), Expect = 5e-21
Identities = 61/64 (95%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 561 TCCGTCCTATACATTCCATCGAACCGTTGGATCGGGAGGTAGCATGCGCATCAGTTCGGT 620
||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 TCCATCCTCTACACTCCATCGAACCGTTGGATCGGGAGGTAGCATGCGCATCAGTTCGGT 808
Query 621 CGAG 624
||||
Sbjct 807 CGAG 804
> AT4G06496.1 | Symbols: | transposable element gene | chr4:3136680-3137837
FORWARD LENGTH=1158
Length=1158
Score = 102 bits (55), Expect = 5e-21
Identities = 65/70 (93%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 319 GATTGCATCCATGGGCGACCCTTGGGTGTGTTCGGTTGCACTTATCCTCGTGCTTCTTCG 378
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||
Sbjct 909 GATTGCATCCATGGGCGACCCTTGGGTGTGTTCGGATGCACTTATCCTTGTGCTTCCTCA 850
Query 379 AACACCTTTC 388
||||| ||||
Sbjct 849 AACACTTTTC 840
> AT2G12530.1 | Symbols: | transposable element gene | chr2:5106678-5106974
REVERSE LENGTH=297
Length=297
Score = 102 bits (55), Expect = 5e-21
Identities = 65/70 (93%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 319 GATTGCATCCATGGGCGACCCTTGGGTGTGTTCGGTTGCACTTATCCTCGTGCTTCTTCG 378
|||||||||||||||||||||||||||||||| || |||||||||| | ||||||| |||
Sbjct 172 GATTGCATCCATGGGCGACCCTTGGGTGTGTTTGGATGCACTTATCTTTGTGCTTCCTCG 231
Query 379 AACACCTTTC 388
||||||||||
Sbjct 232 AACACCTTTC 241
> AT1G41797.1 | Symbols: | transposable element gene | chr1:15560039-15563509
REVERSE LENGTH=3471
Length=3471
Score = 102 bits (55), Expect = 5e-21
Identities = 66/71 (93%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 319 GATTGCATCCATGGGCGACCCTTGGGTGTGTTCGGTTGCACTTATCCTCGTGCTTC-TTC 377
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||
Sbjct 521 GATTGCATCCATGGGCGACCCTTGGGTGTGTTCGGATGCACTTATCCTTGTGCTTCCTT- 579
Query 378 GAACACCTTTC 388
|||||| ||||
Sbjct 580 GAACACTTTTC 590
Score = 65.8 bits (35), Expect = 7e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 653 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACA 687
|||||||||||||||||||||||||||||||||||
Sbjct 854 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACA 888
> AT5G29060.2 | Symbols: | transposable element gene | chr5:11128470-11129537
REVERSE LENGTH=1068
Length=1068
Score = 97.1 bits (52), Expect = 2e-19
Identities = 60/64 (94%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 561 TCCGTCCTATACATTCCATCGAACCGTTGGATCGGGAGGTAGCATGCGCATCAGTTCGGT 620
||| |||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 648 TCCATCCTCTACACTCCATCGAACCGTTGGACCGGGAGGTAGCATGCGCATCAGTTCGGT 589
Query 621 CGAG 624
||||
Sbjct 588 CGAG 585
Score = 73.1 bits (39), Expect = 4e-12
Identities = 42/43 (98%), Gaps = 1/43 (2%)
Strand=Plus/Minus
Query 653 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACA-CTTCGGG 694
||||||||||||||||||||||||||||||||||| |||||||
Sbjct 582 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACAACTTCGGG 540
> AT3G47230.1 | Symbols: | transposable element gene | chr3:17392099-17393699
REVERSE LENGTH=834
Length=834
Score = 97.1 bits (52), Expect = 2e-19
Identities = 91/107 (85%), Gaps = 13/107 (12%)
Strand=Plus/Plus
Query 653 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACA-CTTC-GG--GG--CGAATGGGTGT 706
||||||||||||||||||||||||||||||||||| |||| || || ||||||| ||
Sbjct 261 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACAACTTCAGGATGGGGCGAATGGATGC 320
Query 707 GTT-TCCGAAAG-ATCACATCCGTTCGTTG-CACCCTTCCGAAAGGT 750
|| || |||| ||||||||| ||| ||| ||||||||||||||||
Sbjct 321 -TTCTC--AAAGCATCACATCCCTTC-TTGGCACCCTTCCGAAAGGT 363
> AT3G45095.1 | Symbols: | transposable element gene | chr3:16499710-16504054
REVERSE LENGTH=4345
Length=4345
Score = 97.1 bits (52), Expect = 2e-19
Identities = 60/64 (94%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 561 TCCGTCCTATACATTCCATCGAACCGTTGGATCGGGAGGTAGCATGCGCATCAGTTCGGT 620
||| |||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2440 TCCATCCTCTACACTCCATCGAACCGTTGGACCGGGAGGTAGCATGCGCATCAGTTCGGT 2499
Query 621 CGAG 624
||||
Sbjct 2500 CGAG 2503
Score = 65.8 bits (35), Expect = 7e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 653 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACA 687
|||||||||||||||||||||||||||||||||||
Sbjct 2506 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACA 2540
> AT2G12540.1 | Symbols: | transposable element gene | chr2:5108873-5110827
REVERSE LENGTH=1955
Length=1955
Score = 97.1 bits (52), Expect = 2e-19
Identities = 64/70 (91%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 319 GATTGCATCCATGGGCGACCCTTGGGTGTGTTCGGTTGCACTTATCCTCGTGCTTCTTCG 378
|||||||||||||||||||||||||||||||| || |||||||||| | ||||||| |||
Sbjct 1052 GATTGCATCCATGGGCGACCCTTGGGTGTGTTTGGATGCACTTATCTTTGTGCTTCCTCG 1111
Query 379 AACACCTTTC 388
||||| ||||
Sbjct 1112 AACACTTTTC 1121
Score = 67.6 bits (36), Expect = 2e-10
Identities = 39/40 (98%), Gaps = 1/40 (3%)
Strand=Plus/Plus
Query 653 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACA-CTTC 691
||||||||||||||||||||||||||||||||||| ||||
Sbjct 1390 ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACAACTTC 1429
> AT3G47240.1 | Symbols: | transposable element gene | chr3:17393861-17394988
REVERSE LENGTH=720
Length=720
Score = 76.8 bits (41), Expect = 3e-13
Identities = 45/47 (96%), Gaps = 0/47 (0%)
Strand=Plus/Minus
Query 319 GATTGCATCCATGGGCGACCCTTGGGTGTGTTCGGTTGCACTTATCC 365
||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 463 GATTGCATCCATGGGCGACCCTTGGGTGTGTCCGGATGCACTTATCC 417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41392937128
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5