BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497488
Length=1187
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39990.1 | Symbols: EIF2, AteIF3f, eIF3F | eukaryotic transl... 1735 0.0
> AT2G39990.1 | Symbols: EIF2, AteIF3f, eIF3F | eukaryotic translation
initiation factor 2 | chr2:16698092-16700012 REVERSE
LENGTH=1205
Length=1205
Score = 1735 bits (939), Expect = 0.0
Identities = 1110/1192 (93%), Gaps = 13/1192 (1%)
Strand=Plus/Plus
Query 1 TCCTCTAACGCTAACATCGGAAACCCTAAATCTCCACTCTCTCGCGCCTTTTACCCGTTC 60
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 10 TCCTCTGACGCTCACATCGGAAACCCTAAATCTCCACTCTCTCGCGCCTTTTACCCCTTC 69
Query 61 TCAGAATCTTAACCATGGCGGCGGCGAGCGAGCACACCGTCTTGCAATTCGTGGCTCCGT 120
||||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||||||
Sbjct 70 TCAGAATCTTAACCATGGCGGCGACGAGCGAGCACACCATCTTGCAATTTGTGTCTCCGT 129
Query 121 CATCAACGGCGACGGCAACAACCTCTGTACTCACGGCGAGAATCCACCCTCTCGTTATCT 180
||||||||||| | || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 130 CATCAACGGCGTCCGCTACAACCTCTGTACTCACGGCGAGGATCCACCCTCTCGTTATCT 189
Query 181 TCAACGTATGTGATTGCTTCGTGAGACGTCCTGACTCAGCTGAACGAGTCATCGGAACTC 240
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 TTAACGTCTGTGATTGCTTCGTGAGACGTCCTGACTCAGCTGAACGAGTCATCGGAACTC 249
Query 241 TCCTCGGATCTATCTTACCTGATGGAACCGTCGATATCCGCAATTCATACGCCGTCCCTC 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 250 TCCTCGGATCTATCTTACCTGACGGAACCGTCGATATCCGCAATTCATACGCCGTCCCTC 309
Query 301 ACAATGAATTTTCTGATCAGGTTGCTGTGGATATTGATTACCACCACAATATGTTAGCTT 360
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 ACAATGAATCATCCGATCAGGTTGCTGTGGATATTGATTACCACCACAATATGTTAGCTT 369
Query 361 CACATCTTAAGGTGAATCCCAAGGAAATTATTGTCGGCTGGTATTCAACTGGTGCTGGGG 420
|||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||||||
Sbjct 370 CACACCTTAAGGTGAATTCAAAGGAAACTATTGTCGGCTGGTATTCAACTGGTGCTGGGG 429
Query 421 TTAATGGCGGTAGTGCGCTGATTCATGAGTTCTATGCTAGAGAAGTTACC-AACCCAATT 479
|||||||||||||| ||||||||||||| ||||||||||||||||| ||| |||||||||
Sbjct 430 TTAATGGCGGTAGTTCGCTGATTCATGATTTCTATGCTAGAGAAGT-ACCCAACCCAATT 488
Query 480 CACCTAACTGTGGACACTGGCTTTACAAATGGTGAGGGTACCATAAAAGCTTTTGTCTCT 539
|||||||||||||| ||||| ||||| |||||||||||||| || |||||||||||||||
Sbjct 489 CACCTAACTGTGGATACTGGGTTTACTAATGGTGAGGGTACTATCAAAGCTTTTGTCTCT 548
Query 540 TCAAACCTTTCACTTGGTGATCGACAACTTGCTGCACAATTTCAAGAGATTCCTGTTGAT 599
|||||||| ||||| |||||||||||||| | |||||| |||||||||||||||||||||
Sbjct 549 TCAAACCTCTCACTCGGTGATCGACAACTCGTTGCACATTTTCAAGAGATTCCTGTTGAT 608
Query 600 CTCCGTATGGTTGATGCTGAGAGAGTCGGATTCAATGTCCTCAAGGCAACATCTGTTGAC 659
||||| ||||||||||||||||||||||||||| |||| || ||||||||||||||||||
Sbjct 609 CTCCGCATGGTTGATGCTGAGAGAGTCGGATTCGATGTACTTAAGGCAACATCTGTTGAC 668
Query 660 AAACTCCCAAATGACTTGGAAGGAATGGAGCTAACAATGGAGAGACTGTTAACTTTAATT 719
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||
Sbjct 669 AAACTCCCAAATGACTTGGAAGGAATGGAGTTAACAATGGAGAGGCTGTTAACTCTAATC 728
Query 720 AACGATGTCTACAAATATGTTGACAGCGTCGTGGAAGGTCAAACAGCTCCAGACAACAAC 779
|||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||
Sbjct 729 AACGATGTCTACAAATATGTTGACAGTGTCGTGGGAGGTCAAATAGCTCCAGACAACAAC 788
Query 780 ATTGGACGATTCATTGCAGATGCAGTAGCCTCCCTTCCCAAATTACCTCCTCAAGTCTTC 839
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 789 ATTGGACGATTCATTGCAGATGCAGTAGCCTCCCTTCCCAAGTTACCTCCACAAGTCTTC 848
Query 840 GATGACCTTGTGAACGATAGCCTCCAGGACCAATTGCTTCTGTTGTACCTTTCAAGCATA 899
||| |||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 849 GATAACCTCGTGAATGATAGTCTCCAGGACCAATTGCTTCTGTTGTACCTATCAAGCATA 908
Query 900 ACAAGGACACAGTTGAGTCTAGCGGAGAAGCTAAACACAGCTGCTCAAATGCTCTAATAA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 909 ACAAGGACACAGTTGAGTCTAGCGGAGAAGCTAAACACAGCTGCTCAAATGCTATAATAA 968
Query 960 GCTTTGAAACACAAGGCTTTGCTAAAAATGTGGAATGCTGCTTTTTTGGTTTC-AGTTTT 1018
|||| ||||||||||| ||||||||||||| |||||||||||||||||||||| | ||||
Sbjct 969 GCTTGGAAACACAAGGTTTTGCTAAAAATGGGGAATGCTGCTTTTTTGGTTTCGAATTTT 1028
Query 1019 TCTGTTAACAAGTTTTATGTAAGAATCAGCCTCTTGATGTAGTGTTCCTAAATTGCAA-T 1077
|| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |
Sbjct 1029 -CTTTTAACAAGTTT-ATGTAAGAATCAGCTTCTTGTTGTAGTGTTCCTAAATTGCAAGT 1086
Query 1078 TTATA-AAGAGACAAAA-GACTCAGTTTCGTGAGTTAAGGTCTTTAAATGAGTTCTTTTT 1135
||| | || |||||||| | ||| ||||||||| |||||||||||||| | | | ||||
Sbjct 1087 TTA-AGAA-AGACAAAATG-CTCTGTTTCGTGAATTAAGGTCTTTAAAAGGGAT-TTTT- 1141
Query 1136 AGTTGGTAAGTCTAATTTTAAACAAGATACATAAAAATGAGCTTTGTTCTTT 1187
||||||| | |||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1142 AGTTGGTGTGCCTAATTTTAAACAATATACATATAAATGAGCTTTGTTCTTT 1193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58282832745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5