BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497492
Length=466
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25200.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 320 7e-87
AT5G54560.1 | Symbols: | Protein of unknown function (DUF295) ... 182 3e-45
AT5G54320.1 | Symbols: | Protein of unknown function (DUF295) ... 135 3e-31
AT1G11482.1 | Symbols: | unknown pseudogene | chr1:3867405-386... 122 2e-27
> AT3G25200.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: Protein of unknown function (DUF295)
(TAIR:AT5G54320.1); Has 64 Blast hits to 64 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr3:9176932-9178268 FORWARD LENGTH=507
Length=507
Score = 320 bits (173), Expect = 7e-87
Identities = 308/365 (84%), Gaps = 42/365 (12%)
Strand=Plus/Plus
Query 94 GACGAGGACTGTGTTGTGGCTGTCAAGTTTTTGGGACCTCAACTCAGCTTTTTCAGACCT 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 GACGAGGACTGTGTTGTGGCTGTCAAGTTTTTGGGACCTCAACTCAGCTTTTTCAGACCT 218
Query 154 GC-T-------C------------A--AA-GCCACATTATCGGATCATGGGATCTCCACA 190
|| | | | || ||||||| |||||||| |||||||||||||
Sbjct 219 GCTTAAAGCAACTTTGAGGGGTGGACCAACGCCACATCATCGGATCTTGGGATCTCCACA 278
Query 191 CACACAAGCAAACACCACCGAAGATTCAGAGGTTGCAGCTCCAAAACCTTCCCGAGCGGA 250
|||||||| || | | | | | ||||||||||| ||||||||| | | ||
Sbjct 279 GACACAAGC-AA-A--A--G-A-A-TCAGAGGTTGCGGCTCCAAAA------C---C-GA 319
Query 251 CCAGGACCCAACGCGAGCTTCTGGAATCTTCCTGGGCGAGCGTATTCTTGGTGGAGTCAC 310
||| |||||||||||||||||||||||||| || | |||||||||||||| |||||||||
Sbjct 320 CCAAGACCCAACGCGAGCTTCTGGAATCTTGCTTGACGAGCGTATTCTTGCTGGAGTCAC 379
Query 311 AATCAACCGATGAAACTTTCTTGGTTAAGTGGTACAAGAAGACCTCTGGAAAGATCATGA 370
|| ||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 380 AACCAACCAATGAAACCTTCTTGGTTAAGTGGTACAAGAAGACCTCTCGAAAGATCATGA 439
Query 371 AAACAAAAGGTGTAATGGTGTTCAGGCTAGACCATAAAGGAAACGCTCTTTACACTCAAG 430
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 440 AAACAAAAGGTGTAATGGTGTTCAAGCTAGACCATAAAGGAAACGCTATTTACACTCAAG 499
Query 431 ACATT 435
|||||
Sbjct 500 ACATT 504
> AT5G54560.1 | Symbols: | Protein of unknown function (DUF295)
| chr5:22161134-22162216 FORWARD LENGTH=1083
Length=1083
Score = 182 bits (98), Expect = 3e-45
Identities = 247/315 (78%), Gaps = 26/315 (8%)
Strand=Plus/Plus
Query 161 GCCACATTATCGGATCATGGGATCTCCACACACACAAGCAAACACCA-CCGAAGATTCAG 219
||||| | |||||||||||||||| || | |||| || | ||| | || |||||||||
Sbjct 617 GCCACCTCATCGGATCATGGGATC-CC-CGCACA-GAG-GATCACAATCCCAAGATTCAG 672
Query 220 AGGTTGCAG-CTCCAAAACCTTCCCGAGCGGACC-AGGACCCAA-CGCGAGCTTCTGGAA 276
||| ||| | ||| |||||||||||||| ||| ||| |||| || |||||||||||
Sbjct 673 AGGCTGC-GATTCCGAAACCTTCCCGAGC-TACCTAGG-GCCAAGCGGGAGCTTCTGGAT 729
Query 277 TCTTCCT-GGGCGAGCGTATTCTTGGTGGAGTC-ACAATCAACCGATGAAACTTTCTTGG 334
|| | | | ||| | | |||||||||||| | || | |||| ||||||||||||||
Sbjct 730 TCGTGTTACAG-GAGTGAACACTTGGTGGAGTCAAGAAAC-ACCGGTGAAACTTTCTTGG 787
Query 335 TTAAGTGGTACAAGAA-G--AC--CTCTG-GA-A-AG--ATCATGAAAACAAAAGGTGTA 384
| ||| ||||||| || | || | | | || | | | ||||||||||||||||||
Sbjct 788 TAAAGCGGTACAAAAAGGCCACGAC-CAGAGATACGGTAAAAATGAAAACAAAAGGTGTA 846
Query 385 ATGGTGTTCAGGCTAGACCATAAAGGAAACGCTCTTTACACTCAAGACATTGGAGATCTC 444
|||||||||| ||||||| | ||||| |||||| |||||||| ||||||||||||||||
Sbjct 847 ATGGTGTTCAAGCTAGACGAAAAAGGGAACGCTGTTTACACTGAAGACATTGGAGATCTT 906
Query 445 TGCATTTTCCTCTCA 459
|||||||| ||||||
Sbjct 907 TGCATTTTTCTCTCA 921
> AT5G54320.1 | Symbols: | Protein of unknown function (DUF295)
| chr5:22062805-22063914 FORWARD LENGTH=1110
Length=1110
Score = 135 bits (73), Expect = 3e-31
Identities = 122/145 (84%), Gaps = 5/145 (3%)
Strand=Plus/Plus
Query 21 GCCTCCTTTTGTAACTTTACCTCGTTGCCAAACTCAAATTGTCACCAACGTGGT-A--G- 76
||||||| |||||||| | |||| ||||||||||||||| || ||||| || || | |
Sbjct 378 GCCTCCTCTTGTAACTCTCCCTCATTGCCAAACTCAAATCGTTACCAATGT-GTCATTGT 436
Query 77 CATCTTCTCCTCTTGACGACGAGGACTGTGTTGTGGCTGTCAAGTTTTTGGGACCTCAAC 136
| | ||| ||| ||| || || ||||||||||||||||||||||||||||||||||| |
Sbjct 437 CCGCATCTTCTCCTGAGGATGAAGACTGTGTTGTGGCTGTCAAGTTTTTGGGACCTCAGC 496
Query 137 TCAGCTTTTTCAGACCTGCTCAAAG 161
||||||||| |||||| ||||||||
Sbjct 497 TCAGCTTTTGCAGACCGGCTCAAAG 521
Score = 108 bits (58), Expect = 6e-23
Identities = 200/264 (76%), Gaps = 27/264 (10%)
Strand=Plus/Plus
Query 217 CAGAGGTTGCAGCTCCAAAACCTTCCCGAGCGGACCAGGACCCAACGCG-AGCTTCTGGA 275
||||| |||||| | |||||||||||| ||| ||| | |||| ||| | |||| |||||
Sbjct 673 CAGAGCTTGCAGTTTCAAAACCTTCCCAAGCTGACAAAGACCAAAC-AGAAGCTACTGGA 731
Query 276 ATCTTCCTGGGCGAGCGTA-TTCTTGGTGGAGTCACAATCAACCGATGAAACTTTCTTGG 334
|| | || ||||| | |||||| ||||||| || | | ||||||||||||||
Sbjct 732 TTCATGTTGCAAGAGCG-AGCACTTGGTTGAGTCAC---CAGCTGGTGAAACTTTCTTGG 787
Query 335 TTAAGTGGTACAAGAAGACCTCT-G---GA--A--A-G---AT--C--A--TGAAAACAA 376
||||||||||||||||| | || | || | | | || | | ||||||||
Sbjct 788 TTAAGTGGTACAAGAAGTCTTCAAGCAAGATCATCAAGGGTATTGCGCAAATGAAAACAC 847
Query 377 AAGGTGTAATGGTGTTCAGGCTAGACCATA-AAGGAAACGCTCTTTACACTCAAGACATT 435
||| | |||||||||||| ||| ||| | | |||||||||| ||||||||||||| |||
Sbjct 848 AAGCTTTAATGGTGTTCAAGCTTGACGA-ACAAGGAAACGCGGTTTACACTCAAGATATT 906
Query 436 GGAGATCTCTGCATTTTCCTCTCA 459
||||||||||||||||| || |||
Sbjct 907 GGAGATCTCTGCATTTTTCTTTCA 930
> AT1G11482.1 | Symbols: | unknown pseudogene | chr1:3867405-3868870
REVERSE LENGTH=1123
Length=1123
Score = 122 bits (66), Expect = 2e-27
Identities = 126/152 (83%), Gaps = 15/152 (10%)
Strand=Plus/Plus
Query 320 ATGAAACTTTCTTGGTTAAGTGGTAC---AAG--AAG---ACCTCTGGAA-AG-ATCATG 369
|||||||||||||||||||||||||| ||| ||| | | | ||| || || |||
Sbjct 744 ATGAAACTTTCTTGGTTAAGTGGTACAGGAAGAAAAGCAAAGAT-TTGAAGAGAATGATG 802
Query 370 AAAACAAAAGG-TGTAATGGTGTTCAGGCTAGACCATA-AAGGAAACGCTCTTTACACTC 427
| ||| ||||| |||||||||||||| ||| || || | ||||||| ||| |||||||||
Sbjct 803 ACAAC-AAAGGCTGTAATGGTGTTCAAGCTTGA-CAAAGAAGGAAATGCTGTTTACACTC 860
Query 428 AAGACATTGGAGATCTCTGCATTTTCCTCTCA 459
|||||||||||||||||||||||||||||||
Sbjct 861 GAGACATTGGAGATCTCTGCATTTTCCTCTCA 892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22153258827
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5