BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497493
Length=1067
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50450.1 | Symbols: | HCP-like superfamily protein with MYN... 1282 0.0
> AT5G50450.1 | Symbols: | HCP-like superfamily protein with MYND-type
zinc finger | chr5:20543310-20544753 REVERSE LENGTH=1275
Length=1275
Score = 1282 bits (694), Expect = 0.0
Identities = 819/875 (94%), Gaps = 25/875 (3%)
Strand=Plus/Plus
Query 1 ACAAAACCAACAATAACCAATCTTCTTCCGATGACGCATCTCAACAAAAAACAGAGGTTA 60
|||||||||||||| | ||| |||| | ||||||||||||||||||||||||||||||
Sbjct 30 ACAAAACCAACAATTATCAA---TCTT-CAATGACGCATCTCAACAAAAAACAGAGGTTA 85
Query 61 GAGAAGAA-C----C---A---T----AACCATTTCGACGACTTACATGACGATCTCATC 105
||||| || | | | | ||||||||||| |||||||||||||||||||||
Sbjct 86 GAGAATAACCATAACAATACTGTGAACAACCATTTCGAAGACTTACATGACGATCTCATC 145
Query 106 ATCTCTATCCTCCGTAAACTCGCTTCCTCCGCTTCTTCTCCTTCCGATTTCCTCACCGTA 165
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 146 ATCTCTATCCTCCGCAAACTCGCTACCTCCGCTTCTTCTCCTTCCGATTTCCTCACCGTT 205
Query 166 CTCTCCACATGCAAGAGATTGAATCGGTTAGGTTTACAACCTCTGGTTTTATCAAAAGCC 225
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 206 CTCTCCACATGCAAGAGATTGAATCGGTTAGGATTACATCCTCTGGTTTTATCTAAAGCC 265
Query 226 GGTACTCAAACCCTAGCCGTCACGGCGGAGAAATGGTCAGATTCTTCTCATAAATTCCTC 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 GGTACTCAAACCCTAGCCGTCACGGCGGAGAAATGGTCAGATTCTTCTCATAAATTCCTC 325
Query 286 AAACTCTGTGTTAATGCCGGAAACATCGACGCTTCTTACGCTCTCGGAATGATCCGATTT 345
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 326 AAACTCTGTGTTAATGCCGGAAACATCGACGCTTCGTACTCTCTCGGAATGATCCGATTT 385
Query 346 TACTGTCTTCAAAATCCAGTGAGCGGCGCGTCTTTAATGGCTAAAGCCGCGATTAAATCT 405
|||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 386 TACTGTCTACAAAATCCAGTGAGCGGCGCGTCATTAATGGCTAAAGCGGCGATTAAATCA 445
Query 406 CACGCGCCGGCGCTTTATTCGTTATCGGTGATTCAGTTTAACGGAAGCGGCGGTTCAAAA 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 CACGCGCCGGCGCTTTATTCGTTATCGGTGATTCAGTTTAACGGAAGCGGCGGTTCAAAA 505
Query 466 ACCGATAAGAACCTACGCGCCGGCGTTACTCTTTGTGCACGCTCTGCTTATTTAGGCCAC 525
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 506 ACCGATAAGAATCTACGCGCCGGCGTTGCTCTTTGTGCACGCTCTGCTTATTTAGGCCAC 565
Query 526 GTCGATGCGTTACGAGAGCTTGGTCACCGTCTTCAAGACGGTTACGGTGTTCCTCGTGAC 585
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 566 GTCGATGCGTTACGAGAGCTTGGTCACTGTCTTCAAGACGGTTACGGTGTTCCTCGTGAC 625
Query 586 GTCTCTGAAGGTCGTCGTCTTTTGATTCAAGCTTACGCGCGTGAGCTCGCGTGTTCTCTA 645
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 626 GTCTCCGAAGGTCGTCGTCTTTTGATTCAAGCTAACGCGCGTGAGCTCGCGTGTTCTCTA 685
Query 646 CGCTCTTACCTCTCTCTGAAATATGG--A-GA---CGAGATCTTAACTGATTTAAGCGTG 699
|||||||||||||||||||||| ||| | || ||||| |||||||||||||||||||
Sbjct 686 CGCTCTTACCTCTCTCTGAAATCTGGGGACGAGAACGAGACCTTAACTGATTTAAGCGTG 745
Query 700 GTTCCGGTTCAGGAGATTCATCCGGTTTACCGGTTTTTGAAGGAGTGGTTTAGTTCGGGT 759
||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||
Sbjct 746 GTTCCGGTTCAGGAGATTCATCCGGTTAACCGGTTTTTAAAAGAGTGGTTTAGTTCGGGT 805
Query 760 CGGGTTGATTTATCGGAAGGGTTAAGGATGTGTTCGCACGGTGGTTGTGGAAGGCCGGAG 819
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 806 CGGGTTGATTTAGCGGAAGGGTTAAGGATGTGTTCGCATGGTGGTTGTGGAAGGCCGGAG 865
Query 820 ACTCGGGCTCATGAGTTCCGCCGATGTTCTGTTTG 854
||||||||||||||||| || ||||||||||||||
Sbjct 866 ACTCGGGCTCATGAGTTTCGGCGATGTTCTGTTTG 900
Score = 87.9 bits (47), Expect = 2e-16
Identities = 74/85 (87%), Gaps = 9/85 (11%)
Strand=Plus/Plus
Query 991 TCTTAATTAATTAG-TTT-G-----GGCGTTTCTGAATTC-TCTGATACTAAAATGACAT 1042
|||||||||||||| ||| | |||||||||||| || |||||||||||| || |||
Sbjct 1186 TCTTAATTAATTAGTTTTGGCTAATGGCGTTTCTGAA-TCTTCTGATACTAAACTGGCAT 1244
Query 1043 GTTATTTTAAATAATATAGTTTTTT 1067
|||||||||||||||||||||||||
Sbjct 1245 GTTATTTTAAATAATATAGTTTTTT 1269
Score = 86.1 bits (46), Expect = 6e-16
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 889 ATTGGCGTCGACGGTGAAGCGGTGGCGGTGGAGATTGATGATAATCATG 937
||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 ATTGGCGACGACGGTGAAGCGGTGGCGGTGGAGATTGATGATAATCATG 1055
Score = 80.5 bits (43), Expect = 3e-14
Identities = 45/46 (98%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 939 AAATGACTAAAATGCCAACAGTTTCTTTGACTGTTGAGtttttttt 984
|||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1091 AAATGACTGAAATGCCAACAGTTTCTTTGACTGTTGAGTTTTTTTT 1136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52258767345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5