BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497503
Length=766
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61650.1 | Symbols: CYCP4;2, CYCP4 | CYCLIN P4;2 | chr5:2477... 1125 0.0
> AT5G61650.1 | Symbols: CYCP4;2, CYCP4 | CYCLIN P4;2 | chr5:24778246-24779098
FORWARD LENGTH=758
Length=758
Score = 1125 bits (609), Expect = 0.0
Identities = 719/770 (93%), Gaps = 16/770 (2%)
Strand=Plus/Plus
Query 1 CTTTTCTTCCATCGA-TCGAATGGCTGATCAGATTCAGATCCAGACAATGAATCAAGATC 59
|||||||||| || | ||||||||||||||||||| ||||||||| |||||| |||||||
Sbjct 1 CTTTTCTTCCGTC-ATTCGAATGGCTGATCAGATTGAGATCCAGAGAATGAACCAAGATC 59
Query 60 TTGAAGAACCAATGGCTGAGATCATGCCAAGTGTTTTAACGGCAATGTCGTATCTGTTGC 119
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 60 TTCAAGAACCATTGGCTGAGATCATGCCAAGTGTTTTAACGGCAATGTCGTATCTCTTGC 119
Query 120 AAAGAGTATCGGAGACCAACGACAAGCTGAGCCAGAAACAGAGGATCTCAAGCTTCACTG 179
||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||
Sbjct 120 AAAGAGTATCGGAGACCAACGACAACCTGAGCCAGAAACAGAAGCCCTCAAGCTTCACTG 179
Query 180 GACTAACCAAACCTTCCATTTCCATCAGAAGCTATCTCGAGA-GGATC-TTCAATTACGC 237
|| ||||||||||||||||||||||||||||||||||||| | ||||| || || |||||
Sbjct 180 GAGTAACCAAACCTTCCATTTCCATCAGAAGCTATCTCGA-ACGGATCTTTGAA-TACGC 237
Query 238 GAATTGTAGCTATTCGTGTTACATCGTCGCGTATATATATTTGGATCGGTTCGTGAAGAA 297
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 238 GAATTGTAGCTACTCGTGTTACATCGTCGCATATATATATTTGGATCGGTTCGTGAAGAA 297
Query 298 GCAGCCATTTTTGCCTATCAATTCCTTCAATGTGCATAGGCTTATAATCACAAGTGTTTT 357
|||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||
Sbjct 298 GCAGCCATTTTTGCCTATCAATTCTTTTAATGTCCATAGGCTTATAATCACAAGTGTCTT 357
Query 358 GGTCTCTGCTAAATTCATGGATGACTTGAGTTACAACAATGGATATTATGCAAAAGTTGG 417
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 358 GGTCTCTGCTAAATTCATGGATGACTTGAGTTACAACAATGAATATTATGCAAAAGTTGG 417
Query 418 AGGAATAAGCAGAGAAGAAATGAACATGCTTGAGCTTGACTTCTTGTTCGGAATCGGGTT 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 418 AGGAATAAGCAGAGAAGAAATGAACATGCTTGAGCTTGACTTCTTGTTCGGAATTGGGTT 477
Query 478 TCAGTTAAACGTCACCGTTTCTACTTTCAATAACTACTGTTGTTTTCTACAAAGAGAGAT 537
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 478 TGAGTTAAACGTCACCGTTTCTACTTTCAATAACTATTGTTGTTTTCTACAAAGAGAGAT 537
Query 538 GGGGATGTTGACGAAGATGAAGTCTCTGTTTCTAGAACCTTCTCTTTCATTCAAAAGCTC 597
|| |||||||| ||||||||||||||||||||| ||||||||| | ||||||||| |||
Sbjct 538 GGCGATGTTGATGAAGATGAAGTCTCTGTTTCTTGAACCTTCT-T--CATTCAAAATCTC 594
Query 598 TTCTAAGACGAAACTTCTGATGAATCCACACGAGGACGACTCTTTATCCACTCATCACAA 657
|||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||| |||||
Sbjct 595 TTCTAAGACGAAACTTGTGATGTATCCACACGAGGAAGACTCTTTATCTACTCACCACAA 654
Query 658 CAAGAAGCAACTCGCTGCTGCTTGATCATATTTATGCATTGGGTCGTATAATCACATTGT 717
|||||||||||||||||||||||||| |||||||||||||||||||| || |||| ||||
Sbjct 655 CAAGAAGCAACTCGCTGCTGCTTGATTATATTTATGCATTGGGTCGT-TA-TCACGTTGT 712
Query 718 TGTGTACTGTAAAACCTTCTTT-TATGTCCGAGGGTTCTTGATTAGTGAT 766
||| | ||||||||||| ||| ||| |||||||||||||||||||||||
Sbjct 713 -GTG-A-TGTAAAACCTT-TTTATATATCCGAGGGTTCTTGATTAGTGAT 758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37223502927
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5