BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497506
Length=1652
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50330.1 | Symbols: | Protein kinase superfamily protein | ... 2588 0.0
AT4G24810.2 | Symbols: | Protein kinase superfamily protein | ... 1280 0.0
> AT5G50330.1 | Symbols: | Protein kinase superfamily protein
| chr5:20485223-20488684 REVERSE LENGTH=1744
Length=1744
Score = 2588 bits (1401), Expect = 0.0
Identities = 1542/1609 (96%), Gaps = 13/1609 (1%)
Strand=Plus/Plus
Query 1 CGATCTCTATCAACTTCATCGTTTCTTCCGTTAAAGCTTTCACATTTGTTACGTTCGAAA 60
||||||| ||||||||||||| |||||||| |||||||||||||||| || || |||
Sbjct 18 CGATCTCGATCAACTTCATCGCTTCTTCCG--AAAGCTTTCACATTTGATA---TCAAAA 72
Query 61 TCGAGATACACAAATTGATAACAATCTG-TTCTCCaaaagaaaaagaaaaaaaTGCATGG 119
|||||| ||| ||||||| ||||||||| ||| || || |||||||| |||||||||||
Sbjct 73 TCGAGAAACAAAAATTGAAAACAATCTGTTTCACC--AA-AAAAAGAACAAAATGCATGG 129
Query 120 GTTCGATTTCAAAGAGATTCAGGAGAAGATCTCCGAGAGCTTTCGTCCATGGCAACGCTC 179
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 130 GTTCGATTTCAAAGAGATCCAGGAGAAGATCTCCGATAGCTTTCGTCCATGGCAACGCTC 189
Query 180 TTTTCAATTCTGGGTTCGAGCTACTAATATCTACACAGGCTACAAGGTGTTTCAACTTCG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 TTTTCAATTCTGGGTTCGAGCTACTAATATCTACACAGGCTACAAGGTGTTTCAACTTCG 249
Query 240 AGTGAGTTTAGTGAAAGATGCAAAGAAGCAAGAGGAAATGTGGGAAAGACAACATGAGCA 299
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 250 AGTAAGTTTAGTAAAAGATGCAAAGAAGCAAGAGGAAATGTGGGAAAGACAACATGAACA 309
Query 300 AGCTGCTGATAACATTTACTTCATGTGCTCTGATCTTGGGGGTTTCTTCCTTAAGATTGC 359
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 310 AGCTGCTGATAAGATTTACTTCATGTGCTCTGATCTTGGTGGTTTCTTCCTTAAGATTGC 369
Query 360 TCAACTTTTAGCAAAACCTGACATGGCACCAGCTG-GTTGGGTGAAAAAGCTTGTAACTT 418
||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||
Sbjct 370 TCAACTTTTAGCAAAACCTGACATGGCACCAGCTGCG-TGGGTGAAAAAGCTTGTCACTT 428
Query 419 TGTGTGATCAAGCTCCTGCGACGCCGTTTGATGCAATTCAACTTGTTCTAGAGAAGGAGT 478
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 429 TGTGTGATCAAGCTCCTGCGACGCCGTTTGATGCGATTCAACTTGTTCTAGAGAAGGAGT 488
Query 479 TAGGTAAAAGCATTGGTGAAATCTTTGAAACATTTGATGAAAAGCCTCTTGGTTCTGCTT 538
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 489 TAGGTAAAAGCATTGGTGAAATCTTTGAAACGTTTGATGAAAAGCCTCTTGGTTCTGCTT 548
Query 539 CTATTGCTCAGGTTCACAGAGCAAGAGTAAAGGGTAACAAGATGAATGTTGTTGTAAAGG 598
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 549 CTATTGCTCAGGTTCATAGAGCAATAGTAAAGGGTAACAAGATGAATGTTGTTGTAAAGG 608
Query 599 TTCAACACCCTGGCATCGAAAGGTTGATGATGACAGACATTAGAAACTTGCAACTATTCG 658
||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 609 TTCAACATCCTGGCATTGAAAGATTGATGATGACAGACATAAGAAACTTGCAACTATTCG 668
Query 659 CCTTATACATGCAGAGAACAGATATCAAATTTGACCTGCATTCCATAACCAAGGAAATGG 718
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 669 CCTTATACATGCAGAGAACAGATATCAAATTTGACCTGCATTCCATAACAAAGGAAATGG 728
Query 719 AGAAACAGATTGGTTATGAATTTGACTTCAAAAGGGAGGCCAGTGCAATGGAAAGAATTC 778
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 729 AGAAACAGATTGGTTATGAATTTGACTTCAAAAGGGAGGCCAATGCAATGGAAAGAATTC 788
Query 779 GATGTTTTCTTTATGAGAACAACAAAAAGTCTCCTGTTTTGGTACCAAGAGTTCTGCGAG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 GATGTTTTCTTTATGAGAACAACAAAAAGTCTCCTGTTTTGGTACCAAGAGTTCTGCGAG 848
Query 839 ATATGGTGACTAAGAGGGTTTTGGTGATGGAATACATTAATGGAATTCCAATTCTGAGCA 898
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 849 ATATGGTGACTAAGAGGGTTTTGGTGATGGAATACATTAATGGAATTCCAATCCTGAGCA 908
Query 899 TTGGTGATGAGATGGCTAAAAGAGGGATAAATCCTCATGGTAAGATTGCAGAGGCAGCAA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 TTGGTGATGAGATGGCTAAAAGAGGGATAAATCCTCATGGTAAGATTGCAGAGGCAGCAA 968
Query 959 AGCACAATATACTTAGCAGTTTATCCCGTGCGTATGGCCAAATGATACTGAAAAGTGGTT 1018
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 AGCACAATATACTTAACAGTTTATCCCGTGCGTATGGCCAAATGATACTGAAAAGTGGTT 1028
Query 1019 TCTTTCATGCGGATCCACATCCTGGAAATATCTTGATTTGCAAAGGTCAAGAGGTTGCAC 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 TCTTTCATGCGGATCCACATCCTGGAAATATCTTGATTTGCAAAGGTCAAGAGGTTGCAT 1088
Query 1079 TGCTGGACTATGGTCAAGTGAAGGAACTACCCGACAAGTTGAGACTTGGTTATGCGAATT 1138
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1089 TGCTGGACTATGGTCAAGTGAAGGAACTACCCAACAAGTTGAGACTTGGTTATGCAAATT 1148
Query 1139 TGGTCATTGCCATGGCTGATGACAATGCTTCAGGAGTATCACAGAGCTTTTGGGAAATGG 1198
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1149 TGGTCATTGCCATGGCTGATAACAATGCTTCACGAGTATCACAGAGCTTTTGGGAAATGG 1208
Query 1199 GTTTGCATACAGTGGCCAAGTGTGTGAACGAGCAGCAAGAACTTCTGCGGTTAGCACAAA 1258
|||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1209 GTTTACATACAGTGGCCAAGTGTGAGAATGAGCAGCAAGAACTTCTGCGGTTAGCACAAA 1268
Query 1259 CACTTTTCGATACAAAGATGCC-AGCTGGTCAGACAGTTTTGCAACCATTCTCAGATGAC 1317
||||||| |||||||||||||| | |||||||||||||||| ||||| ||||||||||||
Sbjct 1269 CACTTTTTGATACAAAGATGCCTA-CTGGTCAGACAGTTTTACAACCTTTCTCAGATGAC 1327
Query 1318 TCTTCGATTAAAAAGATAGCCGTTGAGACATTTCCAGAGGAACTGTTCTCTGTACTTCGT 1377
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 TCTTCGATTAAAAAGATAGCCGTTGAGACATTTCCAGAGGAACTGTTCTCTGTACTTCGC 1387
Query 1378 ACTGTGGTTCTGTTAAGAGGACTCAGTGTTGGGATGGGAGTTAATTACTCATGTGCACAA 1437
||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||
Sbjct 1388 ACTGTGGTTCTGTTAAGAGGACTCAGTGTTGGGATGGGAGTTAATTATTCGTGTGCAGAA 1447
Query 1438 CAGTGGAGATCAATGGCCGAAGAGGCTTTACTTGCATCTGGAAGAGTAACACGAGATGGC 1497
|| |||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1448 CAATGGAGAGCAATGGCCGAAGAGGCTTTACTTGCATCTGGAAGAGTGACAAGAGATGGC 1507
Query 1498 AAAGGAAGATCTCGTAGACAGGCTTCTCTCCGAAGGCTACGCCCAGGAAGTTAGGAAAAG 1557
|||| |||||||||||||| ||||||||| |||||||||||| ||||||||||||||||
Sbjct 1508 AAAGAAAGATCTCGTAGACGGGCTTCTCTACGAAGGCTACGCACAGGAAGTTAGGAAAAA 1567
Query 1558 GATAGGAGTATTTATCATCACTTAGACTCTCCCATGAGCAGGATCTGAG 1606
||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1568 GATAGGAGTATTTCTCATCACTTAGACTCTCCCATGAGCAGGATCTGAG 1616
Score = 76.8 bits (41), Expect = 6e-13
Identities = 45/47 (96%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 1606 GTGAGAATTTGAATGATAGGAGAAGTTGGATAGGACTTGAATGTAAT 1652
|||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1644 GTGAGAATTTGAATGATAGGAGAAGTTGGATAACACTTGAATGTAAT 1690
> AT4G24810.2 | Symbols: | Protein kinase superfamily protein
| chr4:12786627-12789713 REVERSE LENGTH=1725
Length=1725
Score = 1280 bits (693), Expect = 0.0
Identities = 1165/1392 (84%), Gaps = 36/1392 (3%)
Strand=Plus/Plus
Query 109 aaaaTGCATGGGTTCGATTTCAAAGAGATTCAGGAGAAGATCTCCGA-GAGCTTTCGTCC 167
|||||||||| | |||||||||||||||||||||||||| |||| || | | || || ||
Sbjct 113 AAAATGCATGCGATCGATTTCAAAGAGATTCAGGAGAAGCTCTCTGATG-GATTCCGGCC 171
Query 168 ATGGCAACGCTCTTTTCAATTCTGGGTTCGAGCTACTAATATCTACACAGGCTACAAGGT 227
|||||||| || ||||| ||||||| ||| || ||| |||||||||| || ||||||||
Sbjct 172 TTGGCAACGATCGTTTCAGTTCTGGGCTCGTGCCACTGATATCTACACCGGATACAAGGT 231
Query 228 GTTTCAACTTCG-AGTGAGTTTAGTGAAAGATGCAAAGAAGCAAGAGGAAATGTGGGAAA 286
||||||||||| | ||| || || || |||| || ||||| ||||| |||||||| |
Sbjct 232 ATTTCAACTTCGTA-TGAACTTCGTCAAGGATGTTAATAAGCACGAGGAGATGTGGGAGA 290
Query 287 GACAACATGAGCAAGCTGCTGATAACA-TTTACTTC-ATGTGCTCTGATCTTGGGGGTTT 344
|||||||||| | |||||| |||| | |||| ||| ||||||||||| ||||| |||||
Sbjct 291 GACAACATGAACTTGCTGCTCATAA-AGTTTA-TTCTATGTGCTCTGACCTTGGTGGTTT 348
Query 345 CTTCCTTAAGATTGCTCAACTTTTAGCAAAACCTGACATGGCACCAGCTGGTTGGGTGA- 403
||||||||||||||| ||| || ||| ||||||||| |||| ||||||| ||||||||
Sbjct 349 CTTCCTTAAGATTGCACAAATTCTAGGGAAACCTGACTTGGCTCCAGCTGCTTGGGTGAG 408
Query 404 AAAAGCTTGTAACTTTGTGTGATCAAGCTCCTGCGACGCCGTTTGATGCAATTCAACTTG 463
|||| || || ||||||||||||||||||||||| || || |||||||| ||| | |||
Sbjct 409 AAAA-CTCGTCACTTTGTGTGATCAAGCTCCTGCCACACCATTTGATGCCGTTCGAGTTG 467
Query 464 TTCTAGAGAAGGAGTTAGGTAAAAGCATTGGTGAAATCTTTGAAACATTTGATGAAAAGC 523
| || ||||| ||||||||||||||||| | || | ||||||||||||||||| ||||
Sbjct 468 TCCTGGAGAAAGAGTTAGGTAAAAGCATCGAACAAGTGTTTGAAACATTTGATGAGAAGC 527
Query 524 CTCTTGGTTCTGCTTCTATTGCTCAGGTTCACAGAGCAAGAGTAAAGGGTAACAAGATGA 583
||||||| |||||||||||||||||||| ||| ||||||||||||||||| |||||| |
Sbjct 528 CTCTTGGCTCTGCTTCTATTGCTCAGGTACACCGAGCAAGAGTAAAGGGTGACAAGAGGG 587
Query 584 ATGTTGTTGTAAAGGTTCAACACCCTGGCATCGA-AAGGTTGATGATGACAGACATTAGA 642
|||||||||||||||| ||||| |||||| | || || |||||||||| || || |||
Sbjct 588 ATGTTGTTGTAAAGGTCCAACATCCTGGCGTTGAGAA-GTTGATGATGGTTGATATCAGA 646
Query 643 AACTTGCAACTATTCGCCTTATACATGCAGAGAACAGATATCAAATTTGACCTGCAT-TC 701
||||||||| |||| || ||||||||||||| ||| ||||||||||||||| || | ||
Sbjct 647 AACTTGCAAATATTTGCATTATACATGCAGAAAACTGATATCAAATTTGACTTG-TTCTC 705
Query 702 CATAACCAAGGAAATGGAGAAACAGATTGGTTATGAATTTGACTTCAAAAGGGAGGCCAG 761
||| || |||||||| ||||| |||||||| |||||||| ||||| |||||||||||||
Sbjct 706 CATGACAAAGGAAATAGAGAAGCAGATTGGGTATGAATTCGACTTTAAAAGGGAGGCCAA 765
Query 762 TGCAATGGA-AAGAATTCGATGTTTTCTTTATGAGAACAACAAAAAGTCTCCTGTTTTGG 820
||||||||| ||| || ||| ||||||| ||||| ||||| | |||| ||||||| |||
Sbjct 766 TGCAATGGAGAAG-ATCCGACGTTTTCTATATGATAACAATAGAAAGAGTCCTGTTCTGG 824
Query 821 TACCAAGAGT-TCTGCGAGATATGGTGACTAAGAGGGTTTTGGTGATGGAATACATTAAT 879
| || || || | | | | || ||||||| | || |||| |||| ||||||| ||| ||
Sbjct 825 TTCCCAGGGTGT-TTCCAAATTTGGTGACCAGGAAGGTTCTGGTTATGGAATTCATGAAC 883
Query 880 GGAATTCCAATTC-TGAGCATTGGTGATGAGATGGCTAAAAGAGGGATAAATCCTCATGG 938
||||| || | || ||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 884 GGAATCCCGA-TCTTGAGCCTTGGTGATGAGATGGCAAAAAGAGGGATAAATCCTCATGG 942
Query 939 TAAGATTGCAGAGGCAGCAAAGCACAATATACTTA-GCAGTTTATCCCGTGCGTATGGCC 997
||| || |||||||||||||| |||||||| || |||||| |||| || |||||||
Sbjct 943 TAAAATGGCAGAGGCAGCAAAATTCAATATAC-TACACAGTTTGTCCCAAGCATATGGCC 1001
Query 998 AAATGATACTGAAAAGTGGTTTCTTTCATGCGGATCCACATCCTGGAAATATCTTGATTT 1057
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1002 AAATGATACTGAAGAGTGGTTTCTTTCATGCGGATCCACATCCTGGGAATATCTTGATTG 1061
Query 1058 GCAAAGGT-CAAGAGGTTGCACTGCTGGACTATGGTCAAGTGAAGGAACTACCC-GACAA 1115
| |||||| || |||||||||||||||||||||||||||||||| ||||| ||| ||| |
Sbjct 1062 GTAAAGGTTCA-GAGGTTGCACTGCTGGACTATGGTCAAGTGAAAGAACT-CCCTGACCA 1119
Query 1116 GTTGAGACTTGGTTATGCGAATTTGGTCATTGCCATGGCTGATGACAATGCTTCA--GGA 1173
|||||||||||||||| |||||||| |||||||| |||||| ||||||| ||| ||
Sbjct 1120 CCTGAGACTTGGTTATGCAAATTTGGTAATTGCCATCGCTGATAACAATGCGTCATTGGC 1179
Query 1174 GTATCACAGAGCTTTTGGGAAATGGGTTT-GCATACAGTGGCCAAGTGTGTGAACGAGCA 1232
|| | |||||||||| ||||| | ||| | || |||||| ||||||||| ||| |||||
Sbjct 1180 GT-T-ACAGAGCTTTAGGGAACTTGGTATAGC-TACAGTAGCCAAGTGTAAGAATGAGCA 1236
Query 1233 GCAAGAACTTCTGCGGTTAGCACAAACACTTTTCGATACAAAGATGCCAGCTGGT-CAGA 1291
||||| ||||| | ||||||| ||||| | ||||| ||| ||||||| ||||| | ||
Sbjct 1237 ACAAGAGCTTCTCCAGTTAGCAAAAACAATGTTCGACACAGAGATGCCTCCTGGTAC-GA 1295
Query 1292 CAGTTTTGCAACCATTCTCAGATGACTCTTCGATTAAAAAGATAGCCGTTGAGACATTTC 1351
|| | ||||||| |||||||| ||||||||||| |||||||| | |||||| ||||||
Sbjct 1296 CAACTCTGCAACCTTTCTCAGAAGACTCTTCGATCAAAAAGATTTCGGTTGAGGCATTTC 1355
Query 1352 CAGAGGAACTGTTCTCTGTACTTCGTACTGTGGTTCTGTTAAGAGGACTCAGTGTTGGGA 1411
|||||||||| |||||||| ||||| || || |||||||||||||||||||| || ||||
Sbjct 1356 CAGAGGAACTCTTCTCTGTTCTTCGCACAGTAGTTCTGTTAAGAGGACTCAGCGTAGGGA 1415
Query 1412 TGGG-AGTTAATTACTCATGTGCACAACAGTGGAGATCAATGGCCGAAGAGGCTTTACTT 1470
| || | |||||||||| || || ||||| ||||| | ||||| ||||||||||| | |
Sbjct 1416 TTGGCA-TTAATTACTCCTGCGCTCAACACTGGAGGGCTATGGCAGAAGAGGCTTTGCAT 1474
Query 1471 GCATCTGGAAGA 1482
||||||||||||
Sbjct 1475 GCATCTGGAAGA 1486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81626086170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5