BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497509
Length=1478
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61250.2 | Symbols: AtGUS1, GUS1 | glucuronidase 1 | chr5:24... 1138 0.0
> AT5G61250.2 | Symbols: AtGUS1, GUS1 | glucuronidase 1 | chr5:24632154-24635303
REVERSE LENGTH=1909
Length=1909
Score = 1138 bits (616), Expect = 0.0
Identities = 739/794 (93%), Gaps = 25/794 (3%)
Strand=Plus/Plus
Query 703 GCTTAGTGGAAGCGGGATTTGGGCAAGCGTGAGTGTAGAGCTTGATGGGAAAGACTTGAT 762
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 743 GCTTAGTGGAAGCGGGATTTGGGCAAGCGTGAGTGTAGAGCTTTATGGGAAAGACTTGAT 802
Query 763 TCTACTGAAAGATGTAATCAATAACGTTTACAAGAATTCTCGGACCAGGCCTTTGGTTGT 822
| |||||||| |||||||||| |||||||||||||||||| | |||| ||||||||||||
Sbjct 803 TGTACTGAAAAATGTAATCAAGAACGTTTACAAGAATTCTAGAACCAAGCCTTTGGTTGT 862
Query 823 AGCTCCAGGTGGATTTTTTGAAGAAAAATGGTACTCGGAGCTTCTTCGGCTCTCTGGACC 882
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 863 AGCTCCAGGTGGATTCTTTGAAGAACAATGGTACTCGGAGCTTCTTCGGCTCTCTGGGCC 922
Query 883 CGGTGTTCTTGATGTCCTGACTCATCATATATACAATCTTGGTCCAGGGAATGATCCTAT 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 TGGTGTTCTTGATGTCCTGACTCATCATATATACAATCTTGGTCCAGGGAATGATCCTAA 982
Query 943 GCTAGTGAATAGGATACTAGATCCAAATTACTTGAGCGGAATTTCAGGAA-CATTTGCCA 1001
||||||||||| ||||||||||||||||||||||||||||||||| |||| ||| || |
Sbjct 983 GCTAGTGAATAAGATACTAGATCCAAATTACTTGAGCGGAATTTC-GGAATTATTCGCGA 1041
Query 1002 ATGTAAACCGAACAATTCAAGAACATGGACCTTGGGCTGCTGCTTGGGTTGGAGAAGCTG 1061
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 ATGTGAACCAAACAATTCAAGAACATGGACCTTGGGCTGCTGCTTGGGTTGGAGAAGCTG 1101
Query 1062 GTGGAGCCTTTAACAGCGGTGGCCGTCAGGTTTCCGAGACATTCATTAACAGTTTCTG-- 1119
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 GTGGAGCCTTTAACAGTGGTGGCCGTCAGGTTTCCGAGACATTCATTAACAGTTTCTGGT 1161
Query 1120 -CT-----C-G---G-TATTTCGTCGAAGCATAACACCAAAGTATACTGCAGACAAGCTT 1168
|| | | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 ACTTAGATCAGCTCGGTATTTCGTCGAAGCATAACACCAAAGTATACTGCAGACAAGCTT 1221
Query 1169 TGGTTGGAGGTTTCTACGGTCTGCTCGAAAAGGAAACGTTTGTTCCCAATCCAGATTACT 1228
|||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1222 TGGTCGGAGGTTTCTACGGTCTGCTTGAAAAGGAAACGTTTGTTCCAAATCCAGATTACT 1281
Query 1229 ACAGGCAACGCGCTTCTTTGGCATCGTTTGATGGGTAAAGGCGTTCTCGGCGTTCAGACA 1288
|||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1282 ACAG-C---GCGCTTCTTTGGCATCGTTTGATGGGTAAAGGCATTCTCGGCGTTCAGACG 1337
Query 1289 ACTGCCTCGGAGTATCTACGAGCTTACGTTCATTGCTCCAAAAGAAGAGCGGGTATAACG 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 ACTGCCTCGGAGTATCTACGAGCTTACGTTCATTGCTCCAAAAGAAGAGCGGGTATAACG 1397
Query 1349 ATTCTTCTGATCAATCTGAGTAAGAACACGACGTTTACGGTCGCAGTCAGCAATGGCGTG 1408
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1398 ATTCTTCTGATCAATCTGAGTAAGCACACGACGTTTACAGTCGCAGTCAGCAATGGCGTG 1457
Query 1409 AATGTTGTTTTGCAAGCAGA-TACGATGAAGAGGAA-TCTTTTCT-GGAA-CACTCAAGA 1464
|| || |||||||||||||| | ||||||||||||| || || || |||| || ||||||
Sbjct 1458 AAGGTGGTTTTGCAAGCAGAAT-CGATGAAGAGGAAATCGTT-CTTGGAAACAATCAAGA 1515
Query 1465 GCAAGGTTTCTTGG 1478
||||||||||||||
Sbjct 1516 GCAAGGTTTCTTGG 1529
Score = 867 bits (469), Expect = 0.0
Identities = 645/725 (89%), Gaps = 31/725 (4%)
Strand=Plus/Plus
Query 1 TCAACGCCAAGAACAAAGA-C-CTCTCTGCTCTGTTTTGAGATCCAGCTACTCTTCAAAG 58
||||| ||||||||||| | | | |||||||||||||||||||||| | | || ||
Sbjct 1 TCAACTCCAAGAACAAAAAGCAC-CTCTGCTCTGTTTTGAGATCCA---A--C--CACAG 52
Query 59 TTCAAACTAATCAAAAGTCCCGATTTCTTACTTCAGTCCA-GCTTTTTTCTCTCAAGTCA 117
||||||||||||||||||||| |||||| ||||||||| | || |||||||||| | |
Sbjct 53 TTCAAACTAATCAAAAGTCCCAATTTCTAACTTCAGTCTAGGC-TTTTTCTCTCCA-T-G 109
Query 118 GAT-TTTCA-TATCAGATCAACCAATC---A-AAACCAAAATGGGCTTTAA-G--GTTGT 168
||| || | | | ||||||||||||| | |||||||||||||||| || | |||||
Sbjct 110 GATCCTTGATTCTGAGATCAACCAATCGAAAGAAACCAAAATGGGCTTCAACGTTGTTGT 169
Query 169 GTTCTTGATTTCTCTGTTTCTAC-T--TCCTGTTACTTTTGGCAGCAACATGGAACGAAC 225
|||||||| || |||| |||||| | ||||||||||||||| |||||||||||||||||
Sbjct 170 GTTCTTGAGTTGTCTGCTTCTACTTCCTCCTGTTACTTTTGGTAGCAACATGGAACGAAC 229
Query 226 CACCTTGGTTATAGACGG-TGGACATGGAATCGCTGAGACCGATGAGAACTTTGTCTGCG 284
|||||||||||||||||| | || | |||||||||||||||||||||||||| ||||||
Sbjct 230 CACCTTGGTTATAGACGGCT-CACGTCGAATCGCTGAGACCGATGAGAACTTTATCTGCG 288
Query 285 CAACGCTTGATTGGTGGCCACCTGAAAAATGTAACTATGATCAGTGTCCTTGGGGTTACG 344
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 289 CAACGCTTGATTGGTGGCCACCTGAAAAATGCAACTATGATCAATGTCCTTGGGGTTACG 348
Query 345 CTTCTCTCATTAATTTGAACTTATCTTCTCCTCTTCTTGCTAAAGCTTTTCAAGCTTTTA 404
| |||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 349 CATCTCTCATCAATTTGAACTTAGCTTCTCCTCTTCTTGCTAAAGCTATTCAAGCTTTTA 408
Query 405 GGACGTTGAGGATAAGAATAGGTGCTTCCTTGCAAGATCAAGTGATCTACGACGTAGGAG 464
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 409 GGACGTTGAGGATAAGAATAGGTGGTTCCTTGCAAGATCAAGTGATCTACGACGTTGGAG 468
Query 465 ACTTGAAGACTCCTTGCACTCAGTTTGAGAAGACAGACGATGGATTGTTCGGATTCTATA 524
||||||||||||||||||||||||| |||| || ||||| |||||||||||||||| |
Sbjct 469 ACTTGAAGACTCCTTGCACTCAGTTCAAGAAAACTGACGACGGATTGTTCGGATTCTCTG 528
Query 525 AAGGATGTTTGTATATGAAACGCTGGGACGAACTTAACCGTTTCTTTCA-CGCAACCGGA 583
|||||||||||||||||||||| ||||||||| |||||| |||||| || |||||| |||
Sbjct 529 AAGGATGTTTGTATATGAAACGTTGGGACGAAGTTAACCATTTCTT-CAACGCAACGGGA 587
Query 584 GCTATCGTTACTTTCGGTTTGGACGCGTTGCATGGGAGAGATAAACTCAACGGAACTGCG 643
||||| || |||||||||||| ||||| |||| |||||| ||||||||||||||||||||
Sbjct 588 GCTATTGTGACTTTCGGTTTGAACGCGCTGCACGGGAGAAATAAACTCAACGGAACTGCG 647
Query 644 TGGGGAGGAGACTGGGATCATACCAACACTCAGGATTTCATGA-CTACACAGTCTCAAAG 702
|||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 648 TGGGGAGGTGATTGGGATCATACCAACACTCAGGATTTCATGAACTACACAGTCTCAAAG 707
Query 703 GCTTA 707
| |||
Sbjct 708 GGTTA 712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72891191340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5