BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497511
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65310.1 | Symbols: ATHB5, ATHB-5, HB5 | homeobox protein 5 ... 1746 0.0
AT2G22430.1 | Symbols: ATHB6, HB6 | homeobox protein 6 | chr2:9... 137 3e-31
> AT5G65310.1 | Symbols: ATHB5, ATHB-5, HB5 | homeobox protein
5 | chr5:26101960-26104614 REVERSE LENGTH=1833
Length=1833
Score = 1746 bits (945), Expect = 0.0
Identities = 1121/1204 (93%), Gaps = 20/1204 (2%)
Strand=Plus/Plus
Query 129 TATTAGTCAATTCTCTGTTTCCATCTTTTATGGATAGTGTAGACACAGAGCAAAGATCCT 188
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 178 TATTAGTCAATTCTCTGTTTCCATCTTATATGGATAGTCTAGACACAGAGCAAAGATCCT 237
Query 189 TCTTTGGAGAAAAACAAGATGAGAGACGAGAGAGGATCGTTTCTTCACGTATTGGTCGTA 248
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TCTTTGGAGAAAAAGAAGATGAGAGACGAGAGAGGATCGTTTCTTCACGTATTGGTCGTA 297
Query 249 GGTAGATCTGAATCGATAACGATATAGGCCTTGATCTAACCATT-ATATATAAACTTCAT 307
| ||||||| |||||||||| || |||||||||||||||||||| | |||||||||| ||
Sbjct 298 GATAGATCTTAATCGATAACCATCTAGGCCTTGATCTAACCATTCA-ATATAAACTTTAT 356
Query 308 TT-CTTCTCAAGTAATTTTCAATCCCTATAGTTCCGACCAAACAAGATGAAGAGGTCACG 366
|| ||||| | ||||| ||| | || |||||||||||||||||||||||| |||||
Sbjct 357 TTCCTTCT----T-CTTTTCGATCTCAATTGTTCCGACCAAACAAGATGAAGAGATCACG 411
Query 367 TGGAAGCTCCGATTCTTTAGCCGGTTTCTTACCAATTCGCCATTCTACAACAGACAAACA 426
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TGGAAGCTCCGATTCTTTATCCGGTTTCTTACCAATTCGCCATTCTACAACAGACAAACA 471
Query 427 AATAAGTCCAAGACCAACAACCACTGGCTTTCTCTATTCCGGCGCCGGAGACTACTCGCA 486
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 472 AATAAGCCCAAGACCAACAACTACCGGCTTTCTCTATTCCGGCGCCGGAGACTACTCCCA 531
Query 487 GATGTTCGACGCATTAGAAGACGACGGAAGTCTAGAAGACATCGGCGGTGTTGGACACGC 546
|||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||
Sbjct 532 GATGTTTGACGCATTAGAAGACGACGGAAGTCTAGAGGACCTCGGCGGCGTTGGACACGC 591
Query 547 GTCTTCTACGGCGGCGGAGAAAAAACGGCGGTTGGGTGTAGAGCAAGTGAAAGCGTTAGA 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 GTCTTCTACGGCGGCGGAGAAAAAACGGCGGTTGGGTGTAGAGCAAGTGAAAGCGTTAGA 651
Query 607 GAAGAATTTTGAGATTGATAACAAGTTAGAGCCAGAAAGGAAAGTGAAGCTGGCCCAAGA 666
||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 652 GAAGAATTTCGAGATTGATAACAAGTTAGAGCCAGAGAGGAAAGTGAAGCTGGCTCAAGA 711
Query 667 GCTTGGGTTGCAGCCGCGTCAAGTGGCGATCTGGTTTCAGAACCGCCGTGCTCGGTGGAA 726
||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 712 GCTTGGGTTGCAGCCACGCCAAGTCGCGATCTGGTTTCAAAACCGCCGTGCTCGGTGGAA 771
Query 727 GACAAAACAGCTTGAACGTGATTATGGCGTTCTTAAGTCAAACTTTGATGCACTCAAACG 786
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 772 GACAAAGCAGCTTGAACGTGATTACGGCGTTCTTAAGTCAAACTTTGATGCACTCAAACG 831
Query 787 CAGCCGCGACTCGCTTCAACGCGATAACGATTCCCTCCTTGGACAGATTAAAGAGCTGAA 846
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 832 CAACCGCGACTCGCTTCAACGCGATAACGATTCACTCCTTGGACAGATTAAAGAGCTGAA 891
Query 847 AACAAAACTTAACGTGGAAGGGGTTAAAGGTATAGAAGAGAACGGCG-TTGAAAAAGCCA 905
| ||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 892 AGCAAAACTTAACGTGGAAGGGGTTAAAGGTATAGAAGAGAACGGCGCTT-TAAAAG-CA 949
Query 906 -TGGAAGCAAATCAGGCGGTGATGGCTAGTAATGAAGTCGTAGAGCTAAACCACCG-TCT 963
||||||||||||| |||||||||||| |||||||||| ||||||||| |||||| ||
Sbjct 950 GTGGAAGCAAATCAATCGGTGATGGCTAATAATGAAGTCTTAGAGCTAAGCCACCGTTC- 1008
Query 964 TCCGCCGCCTCCAACGCATATTCCTACTGAAGATCCGACATCGGAGCTCGCATACGAAAT 1023
||| |||| ||| ||||||||||||| || | |||||||||||||||||||| ||||||
Sbjct 1009 TCCATCGCCACCACCGCATATTCCTACGGACGCTCCGACATCGGAGCTCGCATTCGAAAT 1068
Query 1024 GTTTAGCATTTTTCCACGCACCGAAAACTTCAGAGAAGATCCTGCCGATAGCAGCGACGA 1083
||||||||||||||||||||| |||||||||||||| |||||||||||||||| | |||
Sbjct 1069 GTTTAGCATTTTTCCACGCACGGAAAACTTCAGAGACGATCCTGCCGATAGCA--G-CGA 1125
Query 1084 CTCAAGTGCGGTTTTGAACGAAGAGTATAGTCCCACA-ACCGTTGAAGCAGCGGGCACGG 1142
|||||| |||||||||||||||||||||||||||| | || ||||||||||| ||| | |
Sbjct 1126 CTCAAGCGCGGTTTTGAACGAAGAGTATAGTCCCA-ATACGGTTGAAGCAGCTGGCGCAG 1184
Query 1143 TGGCGGCCACGGCGGTTGAAATGTCGACGATGGGTTGTTTTAGCCAATTCGTGAAGATGG 1202
||||||||||| | || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1185 TGGCGGCCACGACTGTAGAAATGTCGACGATGGGTTGTTTTAGCCAATTCGTGAAAATGG 1244
Query 1203 AAGAGCATGAAGATCTGTTTAGTGGAGAGGAAGCTTGCAAGTTGTTTGCGGACAATGAGC 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 AAGAGCATGAAGATCTGTTTAGTGGAGAGGAAGCTTGCAAGTTGTTTGCGGACAATGAGC 1304
Query 1263 AATGGTATTGCTCCGATCAGTGGAATTCGTAAAATGTGGGGGCAGAATTGAAAGGGTAGG 1322
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1305 AATGGTATTGCTCCGATCAGTGGAATTCGTAAAATGTGGGGGCAGAATTAAAAGCATAG- 1363
Query 1323 AAAA 1326
||||
Sbjct 1364 AAAA 1367
Score = 156 bits (84), Expect = 7e-37
Identities = 117/132 (89%), Gaps = 5/132 (4%)
Strand=Plus/Plus
Query 1 tctctctccctctccctatctatctctctctTACAAATTTCGATTTCTCGGGGG-AAA-A 58
||||| || |||||||| |||||||||||||||| |||||| |||||||||||| ||| |
Sbjct 12 TCTCTATCTCTCTCCCTCTCTATCTCTCTCTTACCAATTTCCATTTCTCGGGGGAAAATA 71
Query 59 AT-ATAAGACTTTTGAAACCTCTATCGCTAATACTTCCCGAGAAAACCTGATGAATTAAA 117
|| ||| ||||||||||| ||| || |||||| ||||| ||||||||||||||||||||
Sbjct 72 ATAATACGACTTTTGAAA--TCTCTCACTAATATTTCCCAAGAAAACCTGATGAATTAAA 129
Query 118 AGTTCATATTTT 129
||||||||||||
Sbjct 130 AGTTCATATTTT 141
Score = 124 bits (67), Expect = 2e-27
Identities = 74/77 (96%), Gaps = 2/77 (3%)
Strand=Plus/Plus
Query 1439 aaaaaaaaTTATGTGACAAAGAAATCGTTTTTTCGTCGTTTATAATATTATTTTGAATAA 1498
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1571 AAAAAAAA-TATGTGACGAAGAAATCGTTTTTTCGTCGTTTATAATATTATTT-GAATAA 1628
Query 1499 TTTTACTTAGGTGAATG 1515
|||||||||||||||||
Sbjct 1629 TTTTACTTAGGTGAATG 1645
Score = 80.5 bits (43), Expect = 4e-14
Identities = 52/56 (93%), Gaps = 2/56 (4%)
Strand=Plus/Plus
Query 1386 GTTCCATGCACGTGTGGCCGTAATCTTTCCAAGGTT-AA-GAGAGGGGACaaaaaa 1439
|||||||||||||||||||||||||||| ||||||| || ||||| ||||||||||
Sbjct 1496 GTTCCATGCACGTGTGGCCGTAATCTTTTCAAGGTTGAATGAGAGAGGACAAAAAA 1551
> AT2G22430.1 | Symbols: ATHB6, HB6 | homeobox protein 6 | chr2:9526095-9527830
REVERSE LENGTH=1529
Length=1529
Score = 137 bits (74), Expect = 3e-31
Identities = 145/178 (81%), Gaps = 10/178 (6%)
Strand=Plus/Plus
Query 590 CAAGTGAAAGCGTTAGAGAAGAATTTTGAGATT-GATAACAAG-TTAGAGCCAGAAAGGA 647
||||| ||||| || ||||||||||||||| || || || ||| || ||||| || ||||
Sbjct 426 CAAGTTAAAGCTTTGGAGAAGAATTTTGAG-TTAGAGAATAAGCTT-GAGCCTGAGAGGA 483
Query 648 AAGTGAAGCTGGCCCAAGAGCTTGGGT-TGCAGCCGCGTCAAGTGGC-GATCTGGTTTCA 705
|||| ||| | || ||||| ||| ||| | || || |||||||| || | | ||||||||
Sbjct 484 AAGTTAAGTTAGCTCAAGAACTT-GGTCTTCAACCTCGTCAAGTTGCTG-TTTGGTTTCA 541
Query 706 GAACCGCCGTGCTCGGTGGAAGACAAAACAGCTTGA-ACGTGATTATGGCGTTCTTAA 762
||||| ||||||||||||||||||||||||||||| | ||||| || ||||||||
Sbjct 542 AAACCGTCGTGCTCGGTGGAAGACAAAACAGCTTGAGAAA-GATTACGGTGTTCTTAA 598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74748611505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5