BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497512
Length=646
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57520.1 | Symbols: ZFP2, ATZFP2 | zinc finger protein 2 | c... 918 0.0
> AT5G57520.1 | Symbols: ZFP2, ATZFP2 | zinc finger protein 2 |
chr5:23295964-23296683 FORWARD LENGTH=720
Length=720
Score = 918 bits (497), Expect = 0.0
Identities = 619/673 (92%), Gaps = 27/673 (4%)
Strand=Plus/Plus
Query 1 tctctcatctctctaatctctctttctctctctatctct-A-AA-AT-TAAAGGTATGGA 56
||||||||||||||||||||||||||||||||||||||| | || || ||||||||||||
Sbjct 1 TCTCTCATCTCTCTAATCTCTCTTTCTCTCTCTATCTCTAAGAATATATAAAGGTATGGA 60
Query 57 CTTTCAGCCAAACACATCTCTACGTCTAAGCCTACCAAGTTACAAGAACCACCAACTAAA 116
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTACCAGCCAAACACATCCCTACGTCTAAGCCTACCAAGTTACAAGAACCACCAACTAAA 120
Query 117 CCTAGAACTTGTTCTCGAGCCTTCTT-C-TG-------C-T--TCTTCTTCCACGAACTC 164
|||||||||||||||||||||||||| | || | | |||||||||||||||||
Sbjct 121 CCTAGAACTTGTTCTCGAGCCTTCTTCCATGTCTTCTTCTTCATCTTCTTCCACGAACTC 180
Query 165 ATCATCATGTTTGGAGCAGCCTAGGGTATTCTCATGTAACTATTGTCAAAGAAAGTTTTA 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCATCATGTTTGGAGCAGCCTAGGGTATTCTCATGTAACTATTGTCAAAGAAAGTTTTA 240
Query 225 TAGCTCTCAAGCTCTTGGTGGTCATCAAAACGCTCATAAGCTTGAGAGAACCTTAGCCAA 284
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAGCTCTCAAGCTCTTGGTGGTCATCAAAACGCTCATAAGCTTGAGAGAACCTTAGCCAA 300
Query 285 GAAGAGTCGAGAACTTTTTAGATCCTCAAACACTGTTGATTCCGACCAGCCTTACCCGTT 344
||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 301 GAAGAGTCGAGAACTCTTTAGATCCTCAAACACTGTTGATTCTGATCAGCCTTACCCGTT 360
Query 345 CTCCGGCCGGTTTGAACTCTACGGCCGTGGCTACGAAGGATTTCTCGAAAGTGGCGGCTC 404
|||||| || ||||| || ||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 CTCCGGTCGCTTTGAGCTTTACGGCCGTGGCTACCAAGGATTTCTCGAAAGTGGCGGCTC 420
Query 405 GAGGGACTTCTCCTCTCGCCGTGTGCCGGAGAGTGGTCTTGACCAGGATCAGGAGAAGAG 464
||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 GAGGGACTTCTCCGCCCGCCGTGTGCCGGAGAGTGGTCTTGATCAGGATCAGGAGAAGAG 480
Query 465 TCACCTTGACTTATCCTTAAGGCTCTAAAATAATCTTATATTTTGTTAGTC-ATAT-T-A 521
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | |
Sbjct 481 TCACCTTGACTTATCCTTAAGGCTCTAAAAGAATCTTATATTTTGTTAGTCTATATATTA 540
Query 522 TCGTATCGATTGTTTATCTTAATAGTAATTGTTTTACTTATTAGTCATTAC-TCTTATCT 580
|| |||| |||||| ||||||| | | |||||||||||||||||||||| | | ||||||
Sbjct 541 TCATATCAATTGTTAATCTTAAAATTGATTGTTTTACTTATTAGTCATTTCCTATTATCT 600
Query 581 GAAAATTCTCTTTGTAA-------CTATGGTCCTAAATTCAAATCAAAATTTGATTTTGG 633
|||| || ||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 601 GAAAGTTTTCTTTGTAAGTTGTAACTATGGTCCTAAATTCAAATCCAAATTTGATTTTGG 660
Query 634 AAGATGGTACCTA 646
|||||||||||||
Sbjct 661 AAGATGGTACCTA 673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31195405287
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5