BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497523
Length=808
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42870.1 | Symbols: PAR1, HLH1 | phy rapidly regulated 1 | c... 869 0.0
> AT2G42870.1 | Symbols: PAR1, HLH1 | phy rapidly regulated 1 |
chr2:17836416-17837250 REVERSE LENGTH=835
Length=835
Score = 869 bits (470), Expect = 0.0
Identities = 743/860 (86%), Gaps = 77/860 (9%)
Strand=Plus/Plus
Query 1 ATCCACATTCCTTACttcttcattattctctcaaactcatcattcttctctctctctctc 60
||||||||||||||||| ||||||||||||||| |||||||| ||| |||||||||
Sbjct 1 ATCCACATTCCTTACTTGTTCATTATTCTCTCAGACTCATCA---TTC-ATCTCTCTCT- 55
Query 61 tctctcCTTCAATGGAAGAAACTTTAGCCACTCCCGACACCACGAGACGCTCTCTGTCAC 120
| ||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 56 T-TCT--TTCAATGGAAGAAACTCTAGCCACTCCCGACGCCACGAGACGCTCTCTGTCAC 112
Query 121 CGTCGTGCTCAGCCGCCGTGAAATCACGCGCCGCTGGTTTCGAGCGCAGAACCAAACGGA 180
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 CGTCATGCTCAGCCACCGTGAAATCACGCGCCGCTGGTTTCGAGCGCAGAACCAAACGGA 172
Query 181 GATTGTCAGAGACTAACGCAAGCGTACGTGAAGACCGGgaagaag-a-a-gaagaagaag 237
||||||||||||||||||||||||||||||||||||| ||||||| | | ||||||||||
Sbjct 173 GATTGTCAGAGACTAACGCAAGCGTACGTGAAGACCGAGAAGAAGCAGAAGAAGAAGAAG 232
Query 238 aCGAGGTAAAGGAAAAGATTGAGGCGTTGCAGAGGATTATCCCCGGAGGAACGGCGCTTG 297
| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 233 ATGAGGTCAAGGAAAAGATTGAGGCGTTGCAGAGGATTATCCCCGGAGGAGCGGCGCTTG 292
Query 298 GTGTGGACGCGCTCTTCGAAGAGACAGCTGGTTACATTATGTCTCTACAATGTCAGATCA 357
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 293 GTGTGGACGCGCTCTTCGAAGAGACAGCTGGTTACATTCTGTCTCTACAATGTCAGATCA 352
Query 358 AAACCATTAAAGTTCTTACTTCGTTTCTCCAACGCGTAGATCAAGAAGACATGAAGTTCG 417
||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 353 AAACCATTAAAGTCCTTACTTCGTTTCTTCAACGCATAGATCAAGAAGACATGAAGTTCG 412
Query 418 GAGGTTGAAGATGACCACACCAAGA-T--TC--CT--CTTC--TT---AAAACCaaaaaa 465
|||||||||||| | |||||||||| | || || |||| || |||| |||||||
Sbjct 413 GAGGTTGAAGATTATCACACCAAGACTGCTCTTCTTTCTTCGATTCCTAAAAACAAAAAA 472
Query 466 aaaC-TCttttttttt----tcttt-----cctttttttATAACATGGGATTTTAGCTTT 515
|||| | ||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 473 AAACGTTTTTTTTTTTCAAATCTTTTATTTCCTTTTTT-ATAACATGGGATTTTAGCTTT 531
Query 516 GATATATGAGGAAAGAGA-T-----TTTTT--CTT-GAGTAGGAGT-------A-TA--A 556
|||||||||||||||||| | ||||| ||| || | | | || |
Sbjct 532 GATATATGAGGAAAGAGACTCAACATTTTTTTCTTCGAATTTTTTTTTTCTTTAGTAGGA 591
Query 557 -T-TAATCTTTAATTTTTAA-GTTCTGGTTTATTTA--A-GTCGTTTCGTAGTTATGAGA 610
| |||||||||||||| || |||||| |||||||| | | |||||| |||||||||
Sbjct 592 GTATAATCTTTAATTTT-AATGTTCTGATTTATTTATTAAGCCGTTTCACGGTTATGAGA 650
Query 611 AGTGTTCATTAACGAAAATTAGCACTAATGTAGCTAGGGAGTGTAGTTACACTACTATAA 670
|||||||||||||||||||||||| |||| || | |||||||| || || |
Sbjct 651 AGTGTTCATTAACGAAAATTAGCATTAAT-TA---A-----TGTAGTTA---TA-TA-A- 695
Query 671 CTTATTTTAGTTGGACGCCATATAG-ATACTTATTAAATTGGATCACGAGGTAGCCCTTG 729
||||||||||| ||||||||||||| ||| ||||||||||||||||||||| | ||||
Sbjct 696 CTTATTTTAGTAGGACGCCATATAGTATAGATATTAAATTGGATCACGAGGTTTCACTTG 755
Query 730 CATTTGAGATTTGACATTAATGATATTGAGAAAGTTAATGTTACGTGGCCCATTTTGAA- 788
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 756 CATATGAGATTTGACATTAATGATATTGAGAAAGTTAATGTTACGTGGCCCATTTTTAAA 815
Query 789 TCTGGGTGAGCTCATTTCAC 808
||||| ||||||||||||||
Sbjct 816 TCTGGATGAGCTCATTTCAC 835
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39333337101
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5