BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497524
Length=1366
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35260.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1834 0.0
> AT2G35260.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G17840.1);
Has 42 Blast hits to 42 proteins in 14 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:14849536-14851969
FORWARD LENGTH=1623
Length=1623
Score = 1834 bits (993), Expect = 0.0
Identities = 1291/1424 (91%), Gaps = 64/1424 (4%)
Strand=Plus/Plus
Query 1 ACACGCACATAGCAGAGCAAATGAAGAAGACGAAGCACACTGAGAATTCACCGGTCAGAG 60
||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ACAAGCACTTAGCAGAGCAAATGAAGAAGACGAAGCACACTGAGAATTCACCGGCCAGAG 60
Query 61 ATCACGACTGAGTACTT-TAGTTTTCCGATTACCTCGAGCAACCTTAAATGGAGCTTCCG 119
||||| | | ||| || ||| |||||| |||| |||| |||||| |||||||||||||
Sbjct 61 ATCACCAATAAGT-GTTGTAG-TTTCCGGTTACTTCGAATAACCTTCAATGGAGCTTCCG 118
Query 120 TTACTCTCGTATGCTAGCTCCGCGTCGTTTTCGCGGACAGGC-T-T--T-TAC-TCTTCT 173
|||||||||||||||||||||||||||||||| ||||||||| | | | | | ||||||
Sbjct 119 TTACTCTCGTATGCTAGCTCCGCGTCGTTTTCACGGACAGGCTTATGCTCTTCTTCTTCT 178
Query 174 TCTTCCTCAACTAGTATCTGTGAGTTCCCGGAGAGAAGACGGAGCTTCAGAA-TGAGATT 232
|| |||||||||||||||| |||||| ||||||||||||||||| || | || |||||||
Sbjct 179 TCCTCCTCAACTAGTATCTATGAGTTTCCGGAGAGAAGACGGAG-TTTAAAATTGAGATT 237
Query 233 CAATGGTGGAGAAAGGTCACGAAGCGTTATAGCTTCCGCTGAACGGAGCAGCGAAGGGAT 292
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 238 CAATGGTGGAGAAAGGTCACGAAGCGTTATAGCTTCCGCTGAACGGAGCAGTGAAGGGAT 297
Query 293 CGAGAAG---ACAG--A----C---GGC---------GGA-G-G-A-G--GATTTGCTGG 325
|||||| |||| | | ||| ||| | | | | ||||||||||
Sbjct 298 TGAGAAGACAACAGACACCGTCGGTGGCGGAGGAGGAGGAGGAGCAGGCAGATTTGCTGG 357
Query 326 TACTGCCATGGAGGTGACAACACTTGATCGTGGATTCGCTAACTCCACCACCGTTGATTT 385
||||||||||||||| || |||||||||||||| || |||||||||||||||||||||||
Sbjct 358 TACTGCCATGGAGGTTACTACACTTGATCGTGGTTTTGCTAACTCCACCACCGTTGATTT 417
Query 386 TCCGATCTGGGACAAAATTGGCGCCGTCGTTAGACTTACTTACGGAATC-G------CGG 438
|||||||||||||||||| ||||||||||||||||||||||| |||||| | ||
Sbjct 418 TCCGATCTGGGACAAAATCGGCGCCGTCGTTAGACTTACTTATGGAATCGGAATATATGG 477
Query 439 AGTC-A----T-TA-CTGGAAGATTCATATGGTTCGGTGACTGGAATTGATTCATCTGGT 491
|| | | | || | |||||||| |||| |||| ||||||||||||||||||||||||
Sbjct 478 AG-CAATGGCTGTAGCAGGAAGATTTATAT-GTTCAGTGACTGGAATTGATTCATCTGGT 535
Query 492 GGATTTGATCCTTCTCTTGACGCACTTCTCGCCGGACTTGGCTATGCAACACCACCAATC 551
|||||||||||||||||||| ||||| || || |||||||||||||||||||||||||||
Sbjct 536 GGATTTGATCCTTCTCTTGATGCACTACTTGCTGGACTTGGCTATGCAACACCACCAATC 595
Query 552 ATGGCTCTTCTCTTCATACTCGATGATGAAGTTGTGAAGCTATCACCGCACGCTCGGGCC 611
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 596 ATGGCTCTTCTCTTCATACTCGACGATGAAGTTGTGAAGCTATCACCGCATGCTCGGGCC 655
Query 612 ATTAGAGATGTGGAAGATGAGGAGCTCAGAAGCTTTTTCTTCGGAATGTCCCCATGGCAG 671
|||||||||||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 656 ATTAGAGATGTGGAAGATGAAGAACTAAGAAGCTTTTTCTTCGGAATGTCCCCATGGCAG 715
Query 672 TTTATACTCATTGTCGCGGCTAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTA 731
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 716 TTTATACTCATTGTCGCGGCCAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTA 775
Query 732 CAGGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCTAGAGGC 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CAGGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCTAGAGGC 835
Query 792 ATGGCATCTCTGACCGGAGTGTTTCCTCCATTTGTCCCATTTGCTCAAGCCTTTGCAGCT 851
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 836 ATGGCATCTCTGACCGGAGTGTTTCCTCCATTTGTCCCATTTGCTGAAGTCTTTGCAGCT 895
Query 852 GTAATCACTGCCACTCTCACAGGCTCTCTCTACTTTCTTGCTGCTTCTCCAAAGGACCCG 911
|||||||| || |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 896 GTAATCACCGCGACTCTCACAGGCTCTCTCTACTTTCTTGCTGCGTCTCCAAAAGACCCG 955
Query 912 ACATACATTGTTGCCCCGGTTTTAAGGTCACGCCGAGATGATTTTAAGAAGCTTTTGTCA 971
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 956 ACATACATAGTTGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCA 1015
Query 972 GCTTGGTACGAGAAGAGACAGATGAAGAAGATTTACTCTCCCCTACTCGAAGGACTCTTA 1031
|||||||| |||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 1016 GCTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAGGACTCTTA 1075
Query 1032 GCCCTCTATCTCGGTATTGAATGGGTTCAGACCGATAATATTTTAGCACCGATGATGACG 1091
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1076 GCCCTCTATCTCGGTATTGAATGGGTTCAGACGGATAATATATTAGCACCGATGATGACG 1135
Query 1092 CATGGTATATACTCAGCAGTCATATTAGGACATGGGCTGTGGAAAATTCATGATCACCGG 1151
|||||||||||||| || ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1136 CATGGTATATACTCGGCGGTCATATTAGGGCATGGGCTGTGGAAAATTCACGATCACCGG 1195
Query 1152 AGAAGATTACGCCGGAGAATCGAACGCATTAGATCGGAGGCTACCGATAAGTTGATTTAA 1211
||||| ||||||||||||||||||| ||||||||||||||| || |||||||||||||||
Sbjct 1196 AGAAGGTTACGCCGGAGAATCGAACACATTAGATCGGAGGCCACGGATAAGTTGATTTAA 1255
Query 1212 ATCAACTCTAGATG-TTTAATTAGTTGGGAG-TGGATTTGTGTGTAtttttttG-TATGG 1268
||||| | |||||| ||||||| |||||| | |||||||||||||||||||||| |||||
Sbjct 1256 ATCAAATATAGATGGTTTAATTGGTTGGGGGGTGGATTTGTGTGTATTTTTTTGGTATGG 1315
Query 1269 GGTCGTATAGTGATTAGGGAAATTAGCTAGGACCTCTTCCAATTAATTAGAGAGCTGCAT 1328
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1316 GGTCGTATAGTGATTAGGGAAATTAGCTAGGACCTCTTCCAATTAATTAGAGAGCTACAT 1375
Query 1329 -A--CAGTAGAAAATTACAT-A--TATACGTACATATATAATAT 1366
| ||||||| ||||| || | ||||||||||||||||||||
Sbjct 1376 GATACAGTAGATAATTA-ATTACATATACGTACATATATAATAT 1418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67268730300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5