BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497526
Length=612
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34700.1 | Symbols: | Pollen Ole e 1 allergen and extensin ... 929 0.0
> AT2G34700.1 | Symbols: | Pollen Ole e 1 allergen and extensin
family protein | chr2:14634134-14635627 REVERSE LENGTH=722
Length=722
Score = 929 bits (503), Expect = 0.0
Identities = 578/614 (94%), Gaps = 6/614 (1%)
Strand=Plus/Plus
Query 1 TCTTTCTCACTAACAAAGAACAAAAATGGTTTTGGTAATAAAAGCTCTCAAATATCTCTT 60
||||| ||||||||||||||||||||||| | |||||| |||||||||||||||||||||
Sbjct 6 TCTTTTTCACTAACAAAGAACAAAAATGGGTCTGGTAACAAAAGCTCTCAAATATCTCTT 65
Query 61 ACTCCTTTCTATCTCCTTGACTTTCATCTATACCAATGAAGTGTCATCCGCTTCTCCGGT 120
|||||||||||| ||||||||||||||||| ||||||| ||| ||||||||||||||
Sbjct 66 ACTCCTTTCTATTTCCTTGACTTTCATCTACACCAATGCAGTTTCATCCGCTTCTCC--- 122
Query 121 GACGACTCCACCGTCTTCGCCGG-TGAAGATGAGCCGGAGACTTGTGGCAGTTGAAGGCA 179
| |||||||||||| ||||||| | ||||||||| ||||||||||||||||||||||||
Sbjct 123 AATGACTCCACCGTCATCGCCGGCT-AAGATGAGCAGGAGACTTGTGGCAGTTGAAGGCA 181
Query 180 TGGTTTATTGCAAGTCTTGCAAGTATTCCGGCGTCGATAATCTCTTGGAAGCATCTCCTC 239
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 182 TGGTTTATTGCAAGTCATGCAAGTATTCCGGCGTCGATACTCTCTTGGAAGCATCTCCTC 241
Query 240 TTCAAGGAGCGACGGTAAAGCTTGCATGCAACAACACAAAGAGAGGTGTGACAATGGAGA 299
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 TTCAAGGAGCGACCGTAAAGCTTGCATGCAACAACACAAAGAGAGGTGTGACAATGGAGA 301
Query 300 CAAAAACAGACAAAAACGGATACTTTTTCATGTTAGCCCCCAAAAAACTCACGACCTACG 359
||||||||||||||||||||||||| |||||| ||||||| ||||||||||| |||||||
Sbjct 302 CAAAAACAGACAAAAACGGATACTTCTTCATGCTAGCCCCAAAAAAACTCACCACCTACG 361
Query 360 CTTTCCACACGTGCCGGGCTTGGCCCACGAATCCCGGACCCACGACTGCAACGATGACAT 419
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 362 CTTTCCACACGTGCCGGGCTTGGCCTACGAATCCTGGACCCACGACTGCAACGATGACAT 421
Query 420 GCACCGTCCCGTCAAAGCTCAACAATGGAATCACTGGTGCTATGCTTAAGCCTTCTAAAA 479
||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 422 GCACCGTGCCGTCAAAGCTCAACAATGGAATAACCGGTGCTATGCTTAAGCCTTCTAAGA 481
Query 480 CAATCAACATCGGTGAACACGACTACGTTCTCTTCTCTGTTGGTCCCTTCGCGTTTGAGC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 CAATCAACATCGGTGAACACGACTACGTTCTCTTCTCTGTTGGTCCCTTCGCGTTTGAGC 541
Query 540 CTGCCTGTACTCGTTGAAGACTAGAATTTCGTTTTATGTATTTG-TGTGTGGTTGATTGT 598
|||||||| ||| |||||||||| | |||||||||||||||||| |||||| ||||||||
Sbjct 542 CTGCCTGTGCTCTTTGAAGACTATACTTTCGTTTTATGTATTTGGTGTGTGCTTGATTGT 601
Query 599 TATAATGATGATCA 612
||||||||||||||
Sbjct 602 TATAATGATGATCA 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29487444289
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5