BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497527
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33710.1 | Symbols: | CAP (Cysteine-rich secretory proteins... 865 0.0
AT5G26130.1 | Symbols: | CAP (Cysteine-rich secretory proteins... 560 4e-159
> AT4G33710.1 | Symbols: | CAP (Cysteine-rich secretory proteins,
Antigen 5, and Pathogenesis-related 1 protein) superfamily
protein | chr4:16181012-16181776 FORWARD LENGTH=765
Length=765
Score = 865 bits (468), Expect = 0.0
Identities = 527/556 (95%), Gaps = 2/556 (0%)
Strand=Plus/Plus
Query 1 AAAAATGAAGATGTTTAACTCTCCTCAAACCCTAGTACTATTGGCGTTAGCTCTTGTCCT 60
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 50 AAAAATGAAGATGTTTATCTCTCCTCAAACCCTAGTACTATTGGCATTAGCTCTTGTCCT 109
Query 61 AGCTTTTGCAGTTCCACTGAAAGCCCAAGACGGGCGACAGGACTACCTCGATGTACACAA 120
||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct 110 AGCTTTTGCAGTTCCACTGAAAGCCCAAGACCGGCGACAAGACTACCTTGATGTACACAA 169
Query 121 CCATGCTCGAGACGACGTTGGTGTGCCTCATATAAAATGGCATGCGGGGGCGGCGCAATA 180
||||||||||||||||||| |||||||||||||||||||||||||||| || || | |||
Sbjct 170 CCATGCTCGAGACGACGTTAGTGTGCCTCATATAAAATGGCATGCGGGAGCAGCCCGATA 229
Query 181 CGCCTGGAACTATGCTCAAATAAGAAAGCGGGACTGTCGTCTCGTTCACTCAGACTCAGG 240
|||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| |
Sbjct 230 CGCCTGGAACTATGCTCAAAGAAGAAAGCGGGACTGTCGTCTCATTCACTCAAACTCACG 289
Query 241 CGGGCGTTACGGTGAAAACTTGGCATGGAGCAGTGGTGATATGTCCGGAGCTGCCGCAGT 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 CGGACGTTACGGTGAAAACTTGGCATGGAGCAGTGGTGATATGTCCGGAGCTGCCGCAGT 349
Query 301 GAGATTGTGGGTCAAAGAGAAGTCTGACTACTTCCACAAATCGAACACATGTCGTGCTGG 360
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 350 GAGATTGTGGGTCAGGGAGAAGTCTGACTACTTCCACAAATCGAACACATGCCGTGCTGG 409
Query 361 AAAACAATGTGGTCATTATACTCAGGTTGTGTGGAAAAACTCGGAGTGGGTTGGGTGTGC 420
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 410 AAAACAATGTGGTCATTATACTCAAGTTGTGTGGAAAAACTCAGAGTGGGTTGGATGTGC 469
Query 421 CAAAGTCAAGTGTGACAATGGTGGAACCTTTGTGACTTGCAACTATTCTCCTCCCGGTAA 480
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 470 CAAAGTCAAGTGTGACAATGGTGGAACCTTTGTGACTTGCAACTATTCTCATCCTGGTAA 529
Query 481 TGTTAGGGGCCGTTGGCCTTACTAAGTATATGTGTACGCTGACGAATA-AAACTTGTCCA 539
||||||||| ||| ||||||||||| ||||||||||||| |||||| | |||||||||||
Sbjct 530 TGTTAGGGGACGTAGGCCTTACTAACTATATGTGTACGCAGACGAA-AGAAACTTGTCCA 588
Query 540 TAGAGGACGTGTGTGT 555
||||||||||||||||
Sbjct 589 TAGAGGACGTGTGTGT 604
> AT5G26130.1 | Symbols: | CAP (Cysteine-rich secretory proteins,
Antigen 5, and Pathogenesis-related 1 protein) superfamily
protein | chr5:9128110-9128610 REVERSE LENGTH=501
Length=501
Score = 560 bits (303), Expect = 4e-159
Identities = 443/509 (87%), Gaps = 16/509 (3%)
Strand=Plus/Plus
Query 5 ATGAAGATGTTTAACTCTCCTCAAACCCTAGTACTATT-GGCGT-TAGCTCTTGTCCTAG 62
|||||||||||||| ||||||||||| ||| |||| || || | ||| |||| ||||||
Sbjct 1 ATGAAGATGTTTAAATCTCCTCAAACACTAATACT-TTCGG-TTATAGTTCTTTTCCTAG 58
Query 63 CTTTTGCAGTTCCACTGAAAGCCCAAGACGGGCGACAGGACTACCTCGATGTACACAACC 122
||||||||||||| ||||||||||||||| || ||| ||||||||||||| ||||||||
Sbjct 59 CTTTTGCAGTTCCTCTGAAAGCCCAAGACCAGCCACAAGACTACCTCGATGAACACAACC 118
Query 123 ATGCTCGAGA-CGACGTTGGTGTGCCTCATATAAAATGGCATGCGGGGGCGGCGCAATAC 181
||||||| | | | ||||||||||||| ||| ||||||||||||||||||| |||||||
Sbjct 119 GTGCTCGA-ACCCAAGTTGGTGTGCCTCCTATGAAATGGCATGCGGGGGCGGAGCAATAC 177
Query 182 GCCTGGAACTATGCTCAA-ATAAGAAAGCGG-GACTGTCGTCTCGTTCACT-CAGACTCA 238
|||||||||||||||||| | ||||||| || |||||| ||||| ||||| || |||||
Sbjct 178 GCCTGGAACTATGCTCAACA-AAGAAAG-GGAGACTGTAGTCTCACTCACTCCA-ACTCA 234
Query 239 GGCGGGCGTTACGGTGAAAACTTGGCATGGAGCAGTGGTGATATGTCCGGAGCTGCCGCA 298
|||| ||||||||||||||||||||||||| | |||| | |||| ||||||| |||
Sbjct 235 AATGGGCTTTACGGTGAAAACTTGGCATGGAGCGGAGGTGCTTTGTCTGGAGCTGAGGCA 294
Query 299 GTGAGATTGTGGGTCAAAGAGAAGTCTGACTACT-TCCACAAATCGAACACATGTCGTGC 357
|||| |||||||||||| |||||||||||||| | || || |||||||| ||| |||
Sbjct 295 GTGAAATTGTGGGTCAACGAGAAGTCTGACTA-TATCTACGCTTCGAACACTTGTAGTGA 353
Query 358 TGGAAAACAATGTGGTCATTATACTCAGGTTGTGTGGAAAAACTCGGAGTGGGTTGGGTG 417
||||||||||||||||||||| ||||| ||||||||| || ||||||||||||||||||
Sbjct 354 TGGAAAACAATGTGGTCATTACACTCAAGTTGTGTGGCGAACCTCGGAGTGGGTTGGGTG 413
Query 418 TGCCAAAGTCAAGTGTGACAATGGTGGAACCTTTGTGACTTGCAACTATTCTCCTCCCGG 477
||||||||| |||||||||||||||||||||||||||||||||||||||| ||| || ||
Sbjct 414 TGCCAAAGTAAAGTGTGACAATGGTGGAACCTTTGTGACTTGCAACTATTATCCACCTGG 473
Query 478 TAATGT-TAGGGGCCGTTGGCCTTACTAA 505
|||| | ||||||||||||||||||||||
Sbjct 474 TAAT-TATAGGGGCCGTTGGCCTTACTAA 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26624097910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5