BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497529
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31560.1 | Symbols: | Protein of unknown function (DUF1685)... 1548 0.0
AT1G05870.1 | Symbols: | Protein of unknown function (DUF1685)... 311 1e-83
> AT2G31560.1 | Symbols: | Protein of unknown function (DUF1685)
| chr2:13436557-13438011 FORWARD LENGTH=1169
Length=1169
Score = 1548 bits (838), Expect = 0.0
Identities = 1015/1097 (93%), Gaps = 26/1097 (2%)
Strand=Plus/Plus
Query 1 AGAGAAAAACAACAATGGCTTGTATTCACATCGAATCATCACAT----C--CATGGAAGA 54
|||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 43 AGAGAAAAAC--CAATGGCTTGTATTCACATCGAATCATCACATCCACCTGCATGGAAGA 100
Query 55 CACACTCTGTCCAAGTGAAGAAACCAACAAATGCTGATGTTACATCGAACACAGTCTTAC 114
||||||||||||||| ||| |||||| |||||||||||| || |||||||||| |||||
Sbjct 101 CACACTCTGTCCAAGAGAACAAACCAGCAAATGCTGATGATATATCGAACACAACCTTAC 160
Query 115 CAGAACACCACCACGACGGTGGTGACGGAGGAATCCAAGAAACGTGGGCCGCGATTGGAA 174
||| | | |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 161 CAG-A-A-CACCACGACGGTGGCGACGGGGGAATCCAAGAAACGTGGGCCGCGATTGGAG 217
Query 175 ACTCCATC-GTAGGAGGAGGAGGCTATTTCGCCGGCGAGAGTAGGAATAAGAAGCTGGAG 233
| || | | | |||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 218 ATTCTGGCGGCA-GAGGAGGAGGCTATTTCGCCGGAGAGAGTAGG---AAGAAGCTGGAG 273
Query 234 AA-AAGGAAGAGCCAAGTGTTGCTTGAGGGATACGCTTTGGATGATAAAGATGATTTGAC 292
|| || |||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 274 AAGAA-GAAGAGCCAAGTGTTGCTTGAGGGATACGCGTTGGATGATCAAGATGATTTGAC 332
Query 293 GAGAGCCAAGAGTTTGACGGAAGATGATCTTGAGGAGCTTAAAGGTTGTTTAGATCTAGG 352
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 333 GAGAGCCAAGAGTTTGACGGATGATGATCTTGAGGAGCTTAAAGGTTGTTTAGATCTAGG 392
Query 353 GTTTGGTTTTAGTTACGACGAGATCCCTGAGCTTTGTAATACTTTGCCTGCGTTAGAGCT 412
|||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 393 GTTTGGTTTTAGTTACGATGAGATCCCTGAGCTTTGCAACACTTTGCCTGCGTTAGAGCT 452
Query 413 TTGTTACTCCATGAGCCAGAAGTTCTTAGATGATAAGCAACAAAATCACCACAAGTCCCC 472
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 453 TTGTTACTCCATGAGCCAGAAGTTCTTAGATGATAAGCAACAAAACCACCACAAGTCCCA 512
Query 473 GGATGAAGATGATTCGCCTCCACCACCGAACACCACCGTTCCAATTGCAAATTGGAAGAT 532
||| |||||||||||| | |||||||||| ||| |||| |||||||||||||||||||||
Sbjct 513 GGAGGAAGATGATTCGTCGCCACCACCGACCACGACCGCTCCAATTGCAAATTGGAAGAT 572
Query 533 ATCTAGTCCTGGTGATGATCCAGATGATGTAAAAGCTAGACTCAAATATTGGGCACAAAC 592
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 CTCTAGCCCTGGTGATGATCCAGATGATGTAAAAGCTAGACTCAAATATTGGGCACAAAC 632
Query 593 TGTTGCTTGCACCGTACGATTGTGCAGCTGAACAAGAATCGATCTTCTTCATTGAACCAG 652
|||||||||||||||||| |||||||||||||| ||||||||| ||| || |||||||||
Sbjct 633 TGTTGCTTGCACCGTACGGTTGTGCAGCTGAACTAGAATCGATTTTCATCTTTGAACCAG 692
Query 653 -GAAAAGACCGTCTTTGCAAGAATGAAGTCTCTGCCATTGTTAGCTGAGAATAGACCTGC 711
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 693 AGAAA-GACCGTCTTTGCAAGAATGAAGTCTCTGCCATTGTTCGCTGAGAATAGACCTGC 751
Query 712 AAATGGGTCTGTGGATAAACTGTTCTTCTGACTGTTTTGTTTGAGTGCAATGTGGTTGCT 771
||||| |||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct 752 AAATGTGTCTGTGGATAAACTGTTCTCCTGACTGTTGTGATTGAGTGCAATGTGGTTGCT 811
Query 772 TTAACATCTAACATCTGAATTAGGGTTCTTGTCCTCTCATACGCAGTGATGAGATTTAGA 831
| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 812 T-AACATATGACATCTGAATTAGGGTTCTTGTCCTCTCATATGCAGTGATGAGATTTAGA 870
Query 832 GACACAAATCAATCTCCAACTGttttttttGAAGATCTCTGCTTTTGGCTGAGGCTTATA 891
||| |||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 871 CACAGAAATCAATCTCCAACTGTTTTTTT-GAAGACCTCTGTTTTTGGCTGAGGCTTATA 929
Query 892 TGATAAC-TTT-GCTTCAATCACAAGATGTCAACAAAGAAAGCACATGACCTTTCTTTTA 949
|||| | ||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 930 TGATGAGGTTTTGCTTCAATCACAAGATGTCAACAAAGAAAGCACATGACCCTTCTTTTA 989
Query 950 TGTTCTTTTACATGTGATTCTTATCTTTTTGTCCCGTGGCTAGGAAAGAATCTGAAACGT 1009
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 990 TGTTCTTTTACATGTGATTCTTATCTTTTTGTCCCGTGGCTAGGAAAGAATCAGAAACTT 1049
Query 1010 TTTGTGGTCATAAGTTGTGAACACGCTTAAACGTGTCGTGTACGATAGGGCAACA-TCCT 1068
|||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||
Sbjct 1050 TTTGTGGTCATAAGTTGTGAACACACTTAAACGTGTCGTGTACGATAGGGCAAAAATCCT 1109
Query 1069 T-CACATGTTCTTTTTA 1084
| |||||||||||||||
Sbjct 1110 TTCACATGTTCTTTTTA 1126
> AT1G05870.1 | Symbols: | Protein of unknown function (DUF1685)
| chr1:1772211-1773293 REVERSE LENGTH=878
Length=878
Score = 311 bits (168), Expect = 1e-83
Identities = 299/362 (83%), Gaps = 10/362 (3%)
Strand=Plus/Plus
Query 271 TGGATGAT--AAA-GATGATTTGACGAGAGCCAAGAGTTTGACGGAAGATGATCTTGAGG 327
|||||||| ||| || ||| |||||||| |||||||||||||||| || || || || |
Sbjct 277 TGGATGATCAAAAGGACGATCTGACGAGATCCAAGAGTTTGACGGATGACGACCTCGAAG 336
Query 328 AGCTTAAAGGTTGTTTAGATCTAGGGTTTGGTTTTAGTTACGACGAGATCCCTGAGCTTT 387
| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 337 ATCTTAGAGGTTGTTTAGATCTAGGGTTTGGTTTTAGCTACGACGAGATCCCTGAGCTCT 396
Query 388 GTAATACTTTGCCTGCGTTAGAGCTTTGTTACTCCATGAGCCAGAAGTTCTTAGATGATA 447
| || ||||| ||||| || |||||||| || || |||||||||||||||||||| ||||
Sbjct 397 GCAACACTTTACCTGCTTTGGAGCTTTGCTATTCAATGAGCCAGAAGTTCTTAGACGATA 456
Query 448 AGCAACA-AAATCACCACAAG-TCCC-CGGATG-AAGAT-GATTCGCCTCCACCACCGAA 502
||||| | |||||||| || | | ||| || ||||| | | || | || |||| |
Sbjct 457 AGCAAAATAAATCACCGGAAACTTCGTCGG-TGGAAGATTG-TCCGTCGCCTCCACTGGT 514
Query 503 CACCACCGTTCCAATTGCAAATTGGAAGATATCTAGTCCTGGTGATGATCCAGATGATGT 562
|||| || ||| ||||| ||||||||||| |||||||| |||||| |||| ||||||||
Sbjct 515 CACCGCCACTCCGATTGCCAATTGGAAGATCTCTAGTCCCGGTGATAATCCGGATGATGT 574
Query 563 AAAAGCTAGACTCAAATATTGGGCACAAACTGTTGCTTGCACCGTACGATTGTGCAGCTG 622
|||||||| |||||||| ||||||||| | ||||| || || || | ||||||||||||
Sbjct 575 GAAAGCTAGGCTCAAATACTGGGCACAAGCCGTTGCCTGTACTGTCCAATTGTGCAGCTG 634
Query 623 AA 624
||
Sbjct 635 AA 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54116187510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5