BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497533
Length=949
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44120.2 | Symbols: | Ribosomal protein L30/L7 family prote... 1221 0.0
AT2G01250.1 | Symbols: | Ribosomal protein L30/L7 family prote... 612 2e-174
AT3G13580.3 | Symbols: | Ribosomal protein L30/L7 family prote... 532 2e-150
> AT2G44120.2 | Symbols: | Ribosomal protein L30/L7 family protein
| chr2:18249042-18250708 REVERSE LENGTH=1220
Length=1220
Score = 1221 bits (661), Expect = 0.0
Identities = 779/835 (93%), Gaps = 12/835 (1%)
Strand=Plus/Plus
Query 118 GAGAAATGGCTGAATCCAAGGTAGTGGTACCAGAGTCTGTATTAAAAAAGATCAAGAGGC 177
|||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||
Sbjct 302 GAGAAATGGCTGAATCCAAGGTAGTGGTTCCAGAGTCTGTGCTAAAGAAGATCAAGAGGC 361
Query 178 AAGAGGAATGGGCATTGGCCAAGAAAGAGGAAACTGTTGCTGCTAAGAAGAAGAGTGTTG 237
|||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct 362 AAGAGGAATGGGCATTGGCCAAGAAAGATGAAGCTGTAGCTGCTAAGAAGAAGAGTGTTG 421
Query 238 AGACCCGCAAGCTCATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGG 297
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 AGGCCCGCAAGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGG 481
Query 298 ATAATGAGTTGATCCGATTGAAAAGGGAGGCTAAGTTGAAAGGAGGGTTCTATGTTGATC 357
|||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||| |
Sbjct 482 ATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTCTACGTTGACC 541
Query 358 CAGAGGCGAAATTGCTCTTTATCATTCGTATCCGTGGTATCAATGCCATTGACCCAAAAA 417
| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 CTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGTATCAATGCCATTGACCCAAAAA 601
Query 418 CCAAGAAAATTTTGCAGCTCCTGCGTTTGAGACAGATCTTTAATGGTGTGTTTCTTAAGG 477
||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 602 CCAAGAAGATTCTGCAGCTCCTGCGTTTGAGACAGATCTTCAATGGTGTGTTTCTTAAGG 661
Query 478 TGAACAAGGCAACAGTAAACATGTTGCGCCGAGTTGAACCTTACGTGACTTACGGATACC 537
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 662 TGAACAAGGCAACAGTAAACATGCTGCGCCGAGTTGAACCATACGTGACTTACGGATACC 721
Query 538 CAAACTTGAAGAGTGTCAAGGAACTGATCTACAAAAGGGGTTATGGAAAGCTGAACCACC 597
||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 722 CAAACTTGAAGAGCGTTAAGGAACTGATCTACAAAAGAGGTTATGGAAAGCTGAACCACC 781
Query 598 AGAGGATAGCACTTACTGACAACTCGATTGTGGATCAAGCTCTAGGGAAGCATGGTATCA 657
||||||||||||||||||||||||| ||||||||||| ||||| || |||||||| ||||
Sbjct 782 AGAGGATAGCACTTACTGACAACTCCATTGTGGATCAGGCTCTCGGAAAGCATGGGATCA 841
Query 658 TCTGCGTGGAGGATCTGATCCATGAGATCATGACCGTTGGACCTCACTTCAAGGAAGCCA 717
||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 842 TCTGCGTTGAGGATCTCATCCACGAGATCATGACTGTTGGACCTCACTTCAAGGAAGCCA 901
Query 718 ACAACTTCCTATGGCCATTCCAATTGAAGGCACCACTCGGTGGTCTTAAGAAGAAGAGAA 777
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 902 ACAACTTCCTGTGGCCATTCCAATTGAAGGCACCACTCGGTGGCCTTAAGAAGAAGAGAA 961
Query 778 ACCACTACGTCGAAGGTGGTGATGCTGGAAACAGGGAGAACTTCATCAACGAGCTTGTCA 837
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 962 ACCACTACGTCGAAGGTGGTGATGCTGGAAACAGGGAGAATTTCATCAACGAGCTTGTCA 1021
Query 838 GGAGAATGAATTGATGAAAGCAAGCTTCCTTCTTTATCTTTGCCCATTAATTTCATAGAT 897
||||||||||||||||||||| |||||||||||||||||| | ||||||| ||||
Sbjct 1022 GGAGAATGAATTGATGAAAGC----TTCCTTCTTTATCTTTGC--A--AATTTCAAAGAT 1073
Query 898 TTTGGGATCTGAGTGTTCTTTTT---GTTCCAGTGATCAGAGACTTGTGATCTTT 949
||||||| | |||| || ||||| |||| ||| ||||||||||||||||||||
Sbjct 1074 TTTGGGACC-GAGTTTTTTTTTTTTTGTTCAAGTTATCAGAGACTTGTGATCTTT 1127
> AT2G01250.1 | Symbols: | Ribosomal protein L30/L7 family protein
| chr2:132697-134455 REVERSE LENGTH=1081
Length=1081
Score = 612 bits (331), Expect = 2e-174
Identities = 616/749 (82%), Gaps = 38/749 (5%)
Strand=Plus/Plus
Query 120 GAAATGGCTGAATCCAAGGTAGTGGTACCAGAGTCTGTATTAAAAAAGATCAAGAG-GCA 178
||||||| ||| || ||||| || || |||||||| || || || |||| ||||| | |
Sbjct 104 GAAATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTGTTGAAGAAGAGGAAGAGAG-A 162
Query 179 AGAGGAATGGGCATTGGCCAAGAAAG-AGGAAACTGTT---GCTGCTAAGAAGAAGAGTG 234
||||||||||| |||| ||| ||| | | || |||| || || |||||||||| |
Sbjct 163 GGAGGAATGGGCTTTGGAGAAG-AAGCA-G-AA-TGTTGAAGCCGCCAAGAAGAAGAACG 218
Query 235 TTGAGACCCGCAAGCTCATCTTCAAGAGAGCTGAGCAGTA-TGCCAAAGAATACGCTGAG 293
|||| | | ||||| |||||||| ||||| ||||| || | |||| ||||| || |||
Sbjct 219 CCGAGAACAGGAAGCTTATCTTCAAAAGAGCCGAGCAATACT-CCAAGGAATATGCCGAG 277
Query 294 AAGGATAATGAGTTGATC-CGATTGAAAAGGGAGGCTAAG-TTGAAAGGAGGGTTCTATG 351
||||| || ||||||||| || |||||| | ||||| ||| || || ||||| |||||||
Sbjct 278 AAGGAGAAGGAGTTGATCTCG-TTGAAACGCGAGGCCAAGCTT-AAGGGAGGTTTCTATG 335
Query 352 TTGATCCAGAGGCGAAATTGCTC-T-TT-ATCATTCGTATCCGTGGTATCAATGCCATTG 408
|||| || || || || |||| | || ||||| |||||||||||||||||||||||||
Sbjct 336 TTGACCCTGAAGC-TAA--GCTCTTGTTCATCATCCGTATCCGTGGTATCAATGCCATTG 392
Query 409 ACCCAAAAACCAAGAAAATTTTGCAGCTCCTGCGTTTGAGACAGATCTTT-AATGGTGTG 467
|||| || || ||||| ||| | |||||| |||||||||||||||| ||| ||||||||
Sbjct 393 ACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGAT-TTTCAATGGTGT- 450
Query 468 TTTC-TTAAGGTGAACAAGGCAAC-AGTAAACATG-TTGCGCCGAGTTGAACCTTACGTG 524
|||| |||| || |||||||| || | | |||||| || ||||| ||||| || || ||
Sbjct 451 TTTCCTTAAAGTCAACAAGGCTACGA-TGAACATGCTT-CGCCGTGTTGAGCCCTATGTC 508
Query 525 ACTTACGGATACCCAAACTTGAAGAGTGTCAAGGAACTGATCTACAAAAGGGGTTATGGA 584
|||||||||| ||| ||||||||||||||||||||| |||||||||| || ||||| |||
Sbjct 509 ACTTACGGATTCCCTAACTTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTACGGA 568
Query 585 AAGCTGAACCACCAGAGGATAGCACTT-ACTGACAACTCGATTGTGGATCAAGCTCTAGG 643
||||| ||||||||||||||||| || ||||||||||| ||||| || || ||||| ||
Sbjct 569 AAGCTTAACCACCAGAGGATAGCT-TTGACTGACAACTCTATTGTAGAGCAGGCTCTTGG 627
Query 644 GAAGCATGGTATCATCTGCG-TGGAGGATCTGATCCATGAGAT-CATGACCGTTGGACCT 701
|||||||||||||| ||| || ||||| ||||||| ||||| | | || || ||||||
Sbjct 628 AAAGCATGGTATCATTTGCACTG-AGGATTTGATCCACGAGATTC-TAACAGTAGGACCT 685
Query 702 CACTTCAAGGAAGCCAACAACTTCCTATGGCCATTCCAA-TTGAAGGCACCACTCGGTGG 760
|| ||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||
Sbjct 686 CATTTCAAGGAAGCCAACAACTTCCTTTGGCCATTCCAGCTT-AAGGCACCACTAGGTGG 744
Query 761 TCTTAAGAAGAAGAGAAACCACTACGTCGAAGGTGGTGATGCTGGAAACAGGGAGAACTT 820
|| |||||||||||||| |||||||| |||||||||||||| |||||| | ||||||||
Sbjct 745 CCTCAAGAAGAAGAGAAATCACTACGTGGAAGGTGGTGATGCCGGAAACCGTGAGAACTT 804
Query 821 CATCAACGAGCTTGTCAGGAGAATGAATT 849
|||||| |||||| ||||||| |||||||
Sbjct 805 CATCAATGAGCTTATCAGGAGGATGAATT 833
> AT3G13580.3 | Symbols: | Ribosomal protein L30/L7 family protein
| chr3:4433171-4435305 FORWARD LENGTH=1569
Length=1569
Score = 532 bits (288), Expect = 2e-150
Identities = 577/715 (81%), Gaps = 26/715 (4%)
Strand=Plus/Plus
Query 150 GAGTCTGTATTAAAAAAGATCAAGAGGCAAGAGGAATGGGCA-TTGGCCAAGAAAGAGGA 208
||||| || || || |||| |||||| | || ||||||||| || ||||||||| |||
Sbjct 672 GAGTCAGTGTTGAAGAAGAGAAAGAGGGAGGAAGAATGGGCACTT-GCCAAGAAACAGG- 729
Query 209 AAC-TGTTGCTGCTAAGAAGAAGAGTGTTGAGACCCGCAAGCTCATCTTCAAGAGAGCTG 267
| | || ||||| || ||| ||| || ||||| | || ||||| || || | |||
Sbjct 730 AGCTTGAGGCTGCCAAAAAGCAGAATGCTGAGAAGAGGAAACTCATATTTAACCGGGCTA 789
Query 268 AGCAGTA-TGCCAAAGAATACGC-TGAGAAGGATAA-TGAGTTGATCCGA-TTGAAAAGG 323
| ||||| | |||| || ||| | ||||| || || || || |||| | |||| |
Sbjct 790 AACAGTACT-CCAAGGAGTAC-CAGGAGAAAGA-AAGGGAATTAATCC-AGCTGAAGCGT 845
Query 324 GAGGCTAAGTTGAAAGGAGGGTTCTATGTTGATCCAGAGGCGAAATTGCTCTTT-ATCAT 382
||||| || ||||||||||| || |||||||| ||||| || ||| |||| ||| || ||
Sbjct 846 GAGGCAAAATTGAAAGGAGGCTTTTATGTTGACCCAGAAGCTAAACTGCT-TTTCATTAT 904
Query 383 TCGTATCCGTGGTATCAATGCCATTGACCCAAAAACCAAGAAAATTTTGCAGCTCCTGCG 442
|||||||||||||||||||||||||||||||| || ||||| |||||||| || ||||
Sbjct 905 CCGTATCCGTGGTATCAATGCCATTGACCCAAAGACAAAGAAGATTTTGCAACTTTTGCG 964
Query 443 TTTGAGACAGATCTTT-AATGGTGTGTTTCTT-AAGGTGAACAAGGCAAC-AGTAAACAT 499
||| |||||||| ||| ||||||||||| ||| ||||| ||||||||||| | ||| |||
Sbjct 965 TTTAAGACAGAT-TTTCAATGGTGTGTT-CTTGAAGGTCAACAAGGCAACCATTAA-CAT 1021
Query 500 G-TTGCGCCGAGTTGAACCTTACGTGACTTACGGATACCCAAACTTGAAGAGTGTCAAGG 558
| || ||||| |||||||| || || || || |||||||| ||||| || ||||| ||||
Sbjct 1022 GCTT-CGCCGTGTTGAACCCTATGTAACCTATGGATACCCGAACTTAAAAAGTGTGAAGG 1080
Query 559 AACTGATCTACAAAAGGGGTTATGGAAAGCTGAACCACCAGAGGA-TAGCACTTA-CTGA 616
|| |||| |||||| | |||| ||||||||| ||||||||||||| | || |||| | ||
Sbjct 1081 AATTGATTTACAAACGAGGTTTTGGAAAGCTTAACCACCAGAGGACT-GC-CTTAACAGA 1138
Query 617 CAACTCGATTGTGGATCAAGCTCTAGGGAAGCATGGTATCATCTGCGTGGAGGATCTGAT 676
||| || ||||| ||||| | ||||| |||||||| ||||||||||| |||||||||||
Sbjct 1139 CAATTCTATTGTAGATCAGGGGCTAGGAAAGCATGGCATCATCTGCGTTGAGGATCTGAT 1198
Query 677 CCATGAGATCATGACCGTTGGACCTCACTTCAAGGAAGCCAACAACTTCCTATGGCCATT 736
||||||||||||||| ||||| || || |||||||||||||| ||||| | ||||||||
Sbjct 1199 CCATGAGATCATGACGGTTGGGCCACATTTCAAGGAAGCCAATAACTTTTTGTGGCCATT 1258
Query 737 CCAATTGAAGGCACCACTCGGTGGTCTTAAGAAGAAGAGAAACCACTACGTCGAAGGTGG 796
||| |||||||| ||| | || || | ||||||||||| ||||| ||||| ||||| ||
Sbjct 1259 CCAGTTGAAGGCTCCATTGGGAGGGATGAAGAAGAAGAGGAACCATTACGTGGAAGGAGG 1318
Query 797 TGATGCTGGAAACAGGGAGAACTTCATCAACGAGCTTGTCAGGAGAATGAATTGA 851
|||||||||||| | |||||||||||||||||||| || ||||||||||| |||
Sbjct 1319 AGATGCTGGAAACCGCGAGAACTTCATCAACGAGCTCGTTAGGAGAATGAACTGA 1373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46416351828
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5