BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497537
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16050.1 | Symbols: A37, ATPDX1.2, PDX1.2 | pyridoxine biosy... 1805 0.0
> AT3G16050.1 | Symbols: A37, ATPDX1.2, PDX1.2 | pyridoxine biosynthesis
1.2 | chr3:5443950-5445329 REVERSE LENGTH=1380
Length=1380
Score = 1805 bits (977), Expect = 0.0
Identities = 1143/1220 (94%), Gaps = 24/1220 (2%)
Strand=Plus/Plus
Query 1 TCCATTCTCTCTATAATTCTCCTCACTTTCCACGCAGCTTTCTCGTTCTCGTCTCAGATC 60
||| ||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 137 TCCGTTCTCTCTATATTTCTCCTCACCTTCAACGCAGCTTTCTCGTTCTCGTCTCAGATC 196
Query 61 GTGTTACTAACAAACAACATTTCTCCGGCGAAAA-------G---CT-----CT-----A 100
|||||||||||||||| | ||||||||||||||| | || || |
Sbjct 197 GTGTTACTAACAAACACCGTTTCTCCGGCGAAAAGCTCTCTGTTACTAAAAACTCACAGA 256
Query 101 ACCTAAAAATGGCGGATCAAGCTATGACTGATCAAGAACAAGGAGCTGTTACTCTCTACA 160
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 257 ACCTAAAAATGGCGGATCAAGCTATGACGGATCAAGATCAAGGAGCTGTTACTCTCTACA 316
Query 161 GCGGCGCAGCCATCACCGACGCGAAGAAAAACCATCCGTTCTCTGTTAAGGTTGGATTAG 220
||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 317 GCGGCACAGCCATTACCGACGCGAAGAAAAACCATCCGTTCTCTGTTAAGGTCGGATTAG 376
Query 221 CTCAAGTACTTCGTGGCGGCGCCATTGTTGAGGTTTCTTCTGTTAACCAGGCTAAGATCG 280
|||| |||||||||||||||||||||||||| ||||| || |||||||| |||||| |||
Sbjct 377 CTCAGGTACTTCGTGGCGGCGCCATTGTTGAAGTTTCCTCGGTTAACCAAGCTAAGCTCG 436
Query 281 CTGAATCCGCAGGCGCATGTTCTGTTATCGTCTCAGATCCGGTTCGATCTCGCGGTGGTG 340
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 437 CTGAATCCGCCGGCGCATGTTCTGTAATCGTCTCAGATCCGGTTCGATCTCGCGGCGGTG 496
Query 341 TTCGTCGTATGCCGGATCCGGTTCTTATCAAAGAGGTGAAACGAGCTGTGTCTGTACCTG 400
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 497 TTCGTCGTATGCCGGATCCGGTTCTCATCAAAGAGGTAAAACGAGCTGTGTCTGTACCTG 556
Query 401 TGATGGGACGAGCTCGCGTTGGTCATTTCGTTGAGGCTCAGATCTTGGAATCTCTTGCGG 460
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 557 TGATGGCACGAGCTCGCGTTGGTCATTTTGTTGAGGCTCAGATCTTGGAATCTCTTGCGG 616
Query 461 TTGATTACATTGACGAGAGCGAGATTATCTCTGTAGCGGACGAAGATCATTTCATCAACA 520
|||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 617 TTGATTACATTGACGAGAGCGAGATTATCTCTGTTGCGGATGATGATCATTTCATCAACA 676
Query 521 AACACAATTTCCGATCTCCGTTCATTTGTGGTTGCCGTGATACAGGAGAAGCTTTGAGGA 580
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 AACATAATTTCCGATCTCCGTTCATTTGTGGTTGCCGTGATACAGGAGAAGCTTTGAGGA 736
Query 581 GAATCAGAGAAGGTGCTGCTATGATCAGGATCCAAGGAGATTTAACCGCAACAGGTAATA 640
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 737 GAATCAGAGAAGGTGCTGCTATGATTAGGATCCAAGGAGATTTAACCGCAACAGGTAACA 796
Query 641 TTGCAGAGACTGTGAAGAACGTTAGGTCATTGATGGGTGAAGTTAGAGTCTTGAACAACA 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 TTGCAGAGACTGTGAAGAACGTTAGGTCATTGATGGGTGAAGTTAGAGTCTTGAACAACA 856
Query 701 TGGATGATGATGAGGTGTTTACATTTGCTAAGAAGATATCAGCACCGTATGATCTTGTGG 760
||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 857 TGGATGATGATGAGGTGTTCACGTTTGCTAAGAAGATTTCAGCACCGTATGATCTTGTGG 916
Query 761 CTCAGACTAAGCAGATGGGTAGGGTTCCGGTGGTTCAGTTCGCATCAGGTGGGATCACGA 820
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 917 CTCAGACTAAGCAGATGGGTAGGGTTCCGGTTGTTCAGTTTGCATCAGGTGGGATCACGA 976
Query 821 CTCCTGCTGATGCAGCTTTGATGATGCAGCTTGGTTGTGATGGAGTTTTCGTTGGTTCTG 880
||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||
Sbjct 977 CTCCTGCTGATGCAGCTTTGATGATGCAGCTAGGTTGTGATGGGGTTTTTGTGGGTTCTG 1036
Query 881 AGGTTTTTGATGGTCCTGATCCGTTTAAGAAGCTTAGGAGCATTGTTCAAGCTGTTCAAC 940
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1037 AGGTTTTTGATGGTCCTGATCCGTTTAAGAAACTTAGGAGCATTGTTCAAGCTGTTCAAC 1096
Query 941 ATTACAATGATCCTCATGTGTTGGCTGAGATGAGTTCTGGGTTGGAGAATGCAATGGAGA 1000
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1097 ATTACAATGATCCTCATGTGTTGGCTGAGATGAGTTCTGGATTGGAGAATGCAATGGAGA 1156
Query 1001 GCTTAAATGTTCGTGGTGACAGGATTCAGGATTTTAGCCAAGGAAGTGTTTGATGGGAAG 1060
|||||||||||||||||||||||||||| || ||| ||||||| ||||||||||| |||
Sbjct 1157 GCTTAAATGTTCGTGGTGACAGGATTCAAGACTTTGGCCAAGGCAGTGTTTGATGAAAAG 1216
Query 1061 GTTC-AAGTTGCAAACTTTTTGGGACTTCTAAAGTCGTAATCTTTTTTGGTTT-GACTCT 1118
|||| ||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1217 GTTCGAAGCTGCAAACTTTTTGGGACTTCTAAAGTCGTAATCTTTTTTGGTTTTGAGTCT 1276
Query 1119 TAAAATATCGGTTGTTTTTTGTTAATGCTGGTGCATAAGATCCTTTTGGTTTAATT-AAA 1177
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 1277 CAAAATATCGGTTGTTTTTTGTTAATGCTGGTGCATATGATCCGTTTGGTTTAATCGAAA 1336
Query 1178 GCTTGCAACAACTAAAACCT 1197
|||||||||||||||||||
Sbjct 1337 -CTTGCAACAACTAAAACCT 1355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58784838195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5