BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497538
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38240.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1899 0.0
> AT2G38240.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr2:16012535-16014753
REVERSE LENGTH=1337
Length=1337
Score = 1899 bits (1028), Expect = 0.0
Identities = 1158/1222 (95%), Gaps = 4/1222 (0%)
Strand=Plus/Plus
Query 1 ACCATCTACAACATTCATTCTTCCACTACATTTCTCTCCTTGAGTATCTTCATATCCttt 60
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1 ACCATCTACAACTTTCATTCTTCCACTACATTTCTCTCCTTGAGTATCTTCTTATCC-TA 59
Query 61 ttttCTAACTTCCAAAACAATTCACAAAATGGCTACATGCTGGCCTGAGCCAATTGTTTC 120
||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 60 TTTTCCAAATTCCAAAACAATTCACAAAATGGCTACATGCTGGCCTGAGCCGATTGTTTC 119
Query 121 CGTGCAATCCTTGTCCCAAACCGGTGTACCAACTGTACCAAACCGCTATGTAAAGCCGGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 CGTGCAATCCTTGTCCCAAACCGGTGTACCAACTGTACCAAACCGCTATGTGAAGCCGGC 179
Query 181 TCATCAGAGACCGGTCTTTAACACCACCCAATCCGATGCTGAGATGGAAATCCCCGTTCT 240
||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||
Sbjct 180 TCATCAGAGACCGGTCTTTAACACCACCCAATCCGATGCTGGGATAGAAATCCCTGTTCT 239
Query 241 AGACATGGACGACGTTTGGGGGAAACCAGAGGGGTTAAGGCTCGTGAGGAGCGCGTGTGA 300
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 240 AGACATGAACGACGTTTGGGGGAAACCAGAGGGGCTAAGGCTCGTGAGGAGCGCGTGTGA 299
Query 301 GGAGTGGGGTTTTTTCCAAATGGTGAACCATGGTGTGAACCACTCGCTGATGGAGAGCGT 360
|||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||| ||
Sbjct 300 GGAGTGGGGTTTCTTCCAAATGGTGAACCATGGTGTGACCCACTCGTTGATGGAGAGAGT 359
Query 361 GAGAGGAGCGTGGCGAGAGTTCTTCGAGCTACCGCTAGACGAGAAACGGAAGTATGCAAA 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 360 GAGAGGAGCGTGGCGAGAGTTCTTCGAGCTACCGCTAGAGGAGAAACGGAAGTATGCAAA 419
Query 421 CTCACCGGACACGTACGAGGGATATGGAAGCCGCCTTGGGGTTGTGAAAGATGCTAAATT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTCACCGGACACGTACGAGGGATATGGAAGCCGCCTTGGGGTTGTGAAAGATGCTAAATT 479
Query 481 AGATTGGAGTGATTATTTCTTCCTCAATTACTTGCCTTCTTCCATAAGAAGCCCCTCCAA 540
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 480 AGATTGGAGTGATTATTTCTTCCTCAATTACTTGCCTTCTTCCATAAGAAACCCTTCCAA 539
Query 541 GTGGCCATCTCAGCCTCCTAAGATCAGAGAATTGATTGAAGAGTACGGAGAAGAAGTGAA 600
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 540 GTGGCCATCTCAGCCTCCTAAGATCAGAGAATTGATCGAAAAGTACGGAGAAGAAGTGAG 599
Query 601 AAAACTGTGCGAGAGGCTGACGGAGACATTGTCAGAGAGTTTAGGTTTAGAACCAAACCA 660
|||||||||||| ||||| || ||||| ||||||||||||||||||||| |||||||| |
Sbjct 600 AAAACTGTGCGAAAGGCTAACAGAGACGTTGTCAGAGAGTTTAGGTTTAAAACCAAACAA 659
Query 661 TCTCATGAAGGCTTTAGGAGGAGAAGACAAAGTCGGAGCTTCTCTCAGGACAAACTACTA 720
|||||| ||||||||||||||| |||||||||||||||||||| |||||||||| |||
Sbjct 660 GCTCATGCAGGCTTTAGGAGGAGGCGACAAAGTCGGAGCTTCTCTGAGGACAAACTTCTA 719
Query 721 CCCAAAATGCCCTCAGCCACATCTCACTCTAGGTCTATCTTCCCATTCTGACCCTGGTGG 780
|||||||||||||||||| || |||||| ||||||| ||||| |||||||||||||| ||
Sbjct 720 CCCAAAATGCCCTCAGCCGCAGCTCACTTTAGGTCTCTCTTCTCATTCTGACCCTGGAGG 779
Query 781 CATCACCATTCTCCTCCCGGACGAGAAGGTCGCTGGCCTCCAGGTCCGTCGTGGTGATGG 840
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 CATCACCATTCTTCTCCCGGACGAGAAGGTCGCTGGCCTTCAGGTCCGTCGTGGTGATGG 839
Query 841 CTGGATCACCGTTAAATCAGTCCCCAATGCTTTGATCGTTAACATTGGGGATCAGA-TTC 899
|||| ||||| ||||||||||||| ||||||||||||||||||||||| ||||| | |||
Sbjct 840 CTGGGTCACCATTAAATCAGTCCCTAATGCTTTGATCGTTAACATTGGAGATCA-ACTTC 898
Query 900 AGATACTTAGCAATGGAATTTACAAAAGTGTGGAGCATCAAGTGATCGTTAATTCCGGTA 959
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 899 AGATACTTAGCAATGGAATTTACAAAAGCGTGGAACATCAAGTGATCGTTAATTCCGGTA 958
Query 960 TGGAACGAGTCTCTTTGGCATTCTTCTATAACCCGAGAAGTGATATCCCGATTGGACCAA 1019
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 959 TGGAACGAGTCTCTTTGGCATTCTTCTATAACCCGAGAAGTGATATCCCGGTTGGACCAA 1018
Query 1020 TCGAAGAACTAGTAACAGAAAACCGACCTGCTCTTTATAAACCGATCAGGTTCGACGAGT 1079
|||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1019 TCGAAGAACTAGTAACTGCAAACCGACCTGCTCTTTATAAACCAATCAGGTTCGACGAGT 1078
Query 1080 ACCGTTCTCTGATACGGCAAAAGGGTCCTTGTGGAAAAAACCAGGTTGATTCACTGTTAT 1139
|||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||
Sbjct 1079 ACCGTTCTCTGATAAGGCAAAAGGGTCCTTGTGGAAAAAACCAAGTCGACTCACTGTTAT 1138
Query 1140 TAAGTAGATGATAATTGATACACATTCCAAGTATATATCTCTTATTCCTATGTCCTTGAT 1199
||| ||||| |||||||||| ||||||||||||| ||||| |||||||||||||||||||
Sbjct 1139 TAACTAGATAATAATTGATAAACATTCCAAGTAT-TATCTGTTATTCCTATGTCCTTGAT 1197
Query 1200 ATAGTCGTTACTAAATAATATG 1221
||||||||||||||||||||||
Sbjct 1198 ATAGTCGTTACTAAATAATATG 1219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5