BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg497543

Length=461
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G63240.1 | Symbols:  | Carbohydrate-binding X8 domain superf...   628    1e-179


> AT5G63240.1 | Symbols:  | Carbohydrate-binding X8 domain superfamily 
protein | chr5:25358968-25359565 REVERSE LENGTH=598
Length=598

 Score =  628 bits (340),  Expect = 1e-179
 Identities = 424/463 (92%), Gaps = 12/463 (3%)
 Strand=Plus/Plus

Query  1    ATAATGGTCACAAAAAC-GATATCTCTACCATTGACGCTCTA-CTTCTTCCTCCTCGTAT  58
            ||||||||||| ||||| ||| |||||| ||||||||||| | |||| ||||||||||||
Sbjct  124  ATAATGGTCAC-AAAACTGATGTCTCTATCATTGACGCTC-ATCTTCGTCCTCCTCGTAT  181

Query  59   CCACCGTATCTGTGAACGCCACACTAAGAAACCTCTCGCGGGCGGCTGAAAACAAAGGAG  118
            | |||||||| |||||| | |||| |||||||||||||| ||| ||||||||||||||||
Sbjct  182  CTACCGTATCCGTGAACTCGACACCAAGAAACCTCTCGCAGGCTGCTGAAAACAAAGGAG  241

Query  119  TATGGTGCATAGCGAATGACAAAGGGACAGATAAGCAACTACAAGCGAATATAGATTGGG  178
            ||||||||||||||  |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct  242  TATGGTGCATAGCGGGTGACAAAGCGACAGATAAGCAACTGCAAGCGAATATAGATTGGG  301

Query  179  TTTGCAGCGACGAAGGAGGATTCCGTGACTGTGGAGCGATCAATCCCGGTGGACCTTGCT  238
            |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct  302  TTTGCAGCGACGAAGGAGGATTCCGTGACTGTGGAGCGCTCAATTCCGGTGGACCTTGCT  361

Query  239  TTGAACCAAACACGGTAAGAGACCACGCGTCGTTCGCAATGAACTTGTATTACCAGAACC  298
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  362  TTGAACCAAACACGGTAAGAGATCACGCGTCGTTCGCAATGAACTTGTATTACCAGAACC  421

Query  299  TTGGTGCCACCAAGGCACAATGCAATTTCCATAATACTGGCATTGAAGTTTATACCGACC  358
            ||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||
Sbjct  422  TTGGTGCCACCAAGGAACAATGCAATTTCCATAACACTGGCATTGAAGTTTCTACCGACC  481

Query  359  CAAGCCATGGCTCGTGTGTTTTCGTATCTTATTAGCATTTTAATTTCCGGTTAACATGTA  418
            ||||||||||||||||| ||||||||||||||||| ||| ||||| ||| ||    | ||
Sbjct  482  CAAGCCATGGCTCGTGTATTTTCGTATCTTATTAGAATTCTAATT-CCGCTT----T-TA  535

Query  419  TGTGTGGGAACTTGTTTGGCCGAAACTCCAGTTAAATAAGTTG  461
            |||| || ||||||||  ||| |||||||||||||||||||||
Sbjct  536  TGTG-GG-AACTTGTTAAGCCTAAACTCCAGTTAAATAAGTTG  576



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21967006313


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5