BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg497545 Length=1146 Score E Sequences producing significant alignments: (Bits) Value AT2G14830.1 | Symbols: | Regulator of Vps4 activity in the MVB... 1491 0.0 > AT2G14830.1 | Symbols: | Regulator of Vps4 activity in the MVB pathway protein | chr2:6362524-6365818 FORWARD LENGTH=1365 Length=1365 Score = 1491 bits (807), Expect = 0.0 Identities = 1046/1158 (90%), Gaps = 30/1158 (3%) Strand=Plus/Plus Query 1 ACAATGTTTTGTTTTTTGTTCGGATGGAGAAAAACCTCCAAGTGTAAGAGTGTAGTGAAA 60 ||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| || ||| Sbjct 208 ACAATGTTTTGTTTTTTATTCGGATGGCGAAGAACCTCCAAGTGTAAGAGTGTGGTCAAA 267 Query 61 CAGCTTCAATGTCGTCTAAAGCTACTCAAGAACAAGAAATACGCCATTTCTTCACATTTA 120 |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 268 CAGCTTCAGTGTCGTCTAAACCTACTCAAGAACAAGAAATACGCTATTTCTTCACATTTA 327 Query 121 CGAAACGATATAGCTCAGTTACTACGTATTGGTGAACGAGACCGTGCTCTTCATCGTGCT 180 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 328 CGTAACGACATAGCTCAGTTACTACGTATTGGTGAACGAGACCGTGCTCTTCATCGTGCT 387 Query 181 CAACAACTCTTCCTTGATGAGAG-CTTAATGTCTCTCTACCACTTGTTGCTTCACTTCTC 239 |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 388 CAACAACTCTTCCTTGATGAGAATCT-AATGTCTCTCTACCACTTGTTGCTTCACTTCTC 446 Query 240 CGACATTATCCT-CTTCAACCTCTCTTACATTCGAAGACATAGAGACCTTCCTAATGGCA 298 |||||| ||||| || ||||||||||||||| || |||| ||||||||||||| |||||| Sbjct 447 CGACATAATCCTTCT-CAACCTCTCTTACATCCGGAGACGTAGAGACCTTCCTGATGGCA 505 Query 299 TCAACGAAGCTGTTTCAACACTTGTCTTTGCCTCTGCTAGATGTGGAGACTTGCCTGAGC 358 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 506 TCAATGAAGCTGTTTCAACACTTGTCTTTGCCTCTGCGAGATGTGGAGACTTGCCTGAGC 565 Query 359 TACGAGCCTTGAGGATTCTTTTTGGTGATCGTTATGGGAAACACTTTGTGGACACGGCTC 418 |||||||||| ||| | |||||||| | ||||||||||| ||||||||||||||||||| Sbjct 566 TACGAGCCTTAAGGGTACTTTTTGGCAAGCGTTATGGGAATCACTTTGTGGACACGGCTC 625 Query 419 TTAATCTCCTGCCTTGTAATCGTGTCAACCCTCAGGTTATAGAGAAACTCTCCATAATCA 478 ||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 626 TTAATCTTCTGCCTGGTAATTGTGTCAACCCTCAGGTTATAGAGAAACTCTCCATAATCT 685 Query 479 CAGTATCGGATGATGCCAAGTCCAAACTATTAGGTGAAATAGCGGAAGAGTACAATCTTC 538 |||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||| Sbjct 686 CAGTATCGGATGATGCCAAGTCCAAACTATTAGGTGAAATAGTGGAAGAGTATAACCTTC 745 Query 539 GTTTAGAAGTTTTGGCGCTCGAATATACTCCAGAATTTCACAAACAGGTTACTCTTTGCA 598 || |||| || ||||| ||||||| ||||| ||||||||||||||||| ||| | Sbjct 746 GTCTAGAGGTGTTGGCAATCGAATACACTCCCGAATTTCACAAACAGGT-ACTA-----A 799 Query 599 AAAGCGAGTATGTAGAAGAAGAGAAAGAAGTCATGGGTACCGATTCTGCTCAGCCGTG-T 657 |||||||| | | |||||||||||||||||||||| || || ||||||||||||||| | Sbjct 800 AAAGCGAGAAGGCAGAAGAAGAGAAAGAAGTCATGAGTTCCAATTCTGCTCAGCCGTACT 859 Query 658 G--CATCACAAAAGGCTGATAGCGAAACAGAAGTGTATAAGTTTACTCTCACGGATGCGG 715 | |||||||||||||||| || ||| ||||||||||||||||||||||||||||||||| Sbjct 860 GTTCATCACAAAAGGCTGAGAGTGAAGCAGAAGTGTATAAGTTTACTCTCACGGATGCGG 919 Query 716 ATACAGAGGAAAAACAAGCGCAACAAAGTCGTAGTAAAGCAT-TAAGTGATGAGGATGAT 774 ||| ||||||||| |||| ||| |||| | |||| || | | ||| || |||||| Sbjct 920 ATATAGAGGAAAACCAAGAACAAGAAAG----A--AAAGTATGTGA-TGAGGAAGATGAT 972 Query 775 TGCATAGAGGAAGAAGTGGTGgaaaaagatcagagtgtattcagattcatagaga---ct 831 |||||||||||||||||||||||| |||||||||||||||||||||| | ||||| || Sbjct 973 TGCATAGAGGAAGAAGTGGTGGAAGAAGATCAGAGTGTATTCAGATTTAGAGAGAGTACT 1032 Query 832 gaagaagagaaaaaagagagaaagaggtcaaggagaaaatcaagatcatcatcatcatca 891 ||||| |||| ||||||||||||||||| |||||| ||| |||||||| | | |||||| Sbjct 1033 GAAGATGAGAGAAAAGAGAGAAAGAGGTTAAGGAGGAAACCAAGATCAAC-T--TCATCA 1089 Query 892 tcaagTAGTCCAATTGCGAAAGACGTGGAATGTTGGAGGTACTACTACAAGGGAAAGAGA 951 ||||| ||||| || |||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 1090 TCAAGCAGTCCTATCGCGAAAGACGTGGATTGTTGGAGGTACTATTACAAGGGAAAGAGA 1149 Query 952 AGTCGTCAAAAGAAAGAGTGTGGTAAATGTT---ACCATATAGTGTACAACGTGTTTACA 1008 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1150 AGTCGTCAAAGGAAAGAGTGTGGTAAATGTTGTTACCATATAGTGTACAACGTGTTTACA 1209 Query 1009 ATGTTTCCGGATCAAAAGGAAAGCGAAGAAGGCGAAAGAAGTTTGAAGAAAGCTATGCAT 1068 ||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||||| Sbjct 1210 ATGTTGCCGGATCAAAAGGAAAGCGAAGAAGGAGAAAGAAGTTTCAAAAAAGCTATGCAT 1269 Query 1069 GTTCATCTTAAGCTTCCCGACTATGATCAGATTGTTGCTCACTTTACTGCTCTTAGGAaa 1128 ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 1270 GTTCATCCTAAGCTTCCCGATTATGATCAGATTGTTGCTCACTTCACTGCTCTTAGGAAA 1329 Query 1129 caacaacaacaacaacaa 1146 |||||||||||| ||||| Sbjct 1330 CAACAACAACAAAAACAA 1347 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56224610400 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5