BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497545
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14830.1 | Symbols: | Regulator of Vps4 activity in the MVB... 1491 0.0
> AT2G14830.1 | Symbols: | Regulator of Vps4 activity in the MVB
pathway protein | chr2:6362524-6365818 FORWARD LENGTH=1365
Length=1365
Score = 1491 bits (807), Expect = 0.0
Identities = 1046/1158 (90%), Gaps = 30/1158 (3%)
Strand=Plus/Plus
Query 1 ACAATGTTTTGTTTTTTGTTCGGATGGAGAAAAACCTCCAAGTGTAAGAGTGTAGTGAAA 60
||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| || |||
Sbjct 208 ACAATGTTTTGTTTTTTATTCGGATGGCGAAGAACCTCCAAGTGTAAGAGTGTGGTCAAA 267
Query 61 CAGCTTCAATGTCGTCTAAAGCTACTCAAGAACAAGAAATACGCCATTTCTTCACATTTA 120
|||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 268 CAGCTTCAGTGTCGTCTAAACCTACTCAAGAACAAGAAATACGCTATTTCTTCACATTTA 327
Query 121 CGAAACGATATAGCTCAGTTACTACGTATTGGTGAACGAGACCGTGCTCTTCATCGTGCT 180
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 CGTAACGACATAGCTCAGTTACTACGTATTGGTGAACGAGACCGTGCTCTTCATCGTGCT 387
Query 181 CAACAACTCTTCCTTGATGAGAG-CTTAATGTCTCTCTACCACTTGTTGCTTCACTTCTC 239
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 388 CAACAACTCTTCCTTGATGAGAATCT-AATGTCTCTCTACCACTTGTTGCTTCACTTCTC 446
Query 240 CGACATTATCCT-CTTCAACCTCTCTTACATTCGAAGACATAGAGACCTTCCTAATGGCA 298
|||||| ||||| || ||||||||||||||| || |||| ||||||||||||| ||||||
Sbjct 447 CGACATAATCCTTCT-CAACCTCTCTTACATCCGGAGACGTAGAGACCTTCCTGATGGCA 505
Query 299 TCAACGAAGCTGTTTCAACACTTGTCTTTGCCTCTGCTAGATGTGGAGACTTGCCTGAGC 358
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 506 TCAATGAAGCTGTTTCAACACTTGTCTTTGCCTCTGCGAGATGTGGAGACTTGCCTGAGC 565
Query 359 TACGAGCCTTGAGGATTCTTTTTGGTGATCGTTATGGGAAACACTTTGTGGACACGGCTC 418
|||||||||| ||| | |||||||| | ||||||||||| |||||||||||||||||||
Sbjct 566 TACGAGCCTTAAGGGTACTTTTTGGCAAGCGTTATGGGAATCACTTTGTGGACACGGCTC 625
Query 419 TTAATCTCCTGCCTTGTAATCGTGTCAACCCTCAGGTTATAGAGAAACTCTCCATAATCA 478
||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 626 TTAATCTTCTGCCTGGTAATTGTGTCAACCCTCAGGTTATAGAGAAACTCTCCATAATCT 685
Query 479 CAGTATCGGATGATGCCAAGTCCAAACTATTAGGTGAAATAGCGGAAGAGTACAATCTTC 538
|||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||
Sbjct 686 CAGTATCGGATGATGCCAAGTCCAAACTATTAGGTGAAATAGTGGAAGAGTATAACCTTC 745
Query 539 GTTTAGAAGTTTTGGCGCTCGAATATACTCCAGAATTTCACAAACAGGTTACTCTTTGCA 598
|| |||| || ||||| ||||||| ||||| ||||||||||||||||| ||| |
Sbjct 746 GTCTAGAGGTGTTGGCAATCGAATACACTCCCGAATTTCACAAACAGGT-ACTA-----A 799
Query 599 AAAGCGAGTATGTAGAAGAAGAGAAAGAAGTCATGGGTACCGATTCTGCTCAGCCGTG-T 657
|||||||| | | |||||||||||||||||||||| || || ||||||||||||||| |
Sbjct 800 AAAGCGAGAAGGCAGAAGAAGAGAAAGAAGTCATGAGTTCCAATTCTGCTCAGCCGTACT 859
Query 658 G--CATCACAAAAGGCTGATAGCGAAACAGAAGTGTATAAGTTTACTCTCACGGATGCGG 715
| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||
Sbjct 860 GTTCATCACAAAAGGCTGAGAGTGAAGCAGAAGTGTATAAGTTTACTCTCACGGATGCGG 919
Query 716 ATACAGAGGAAAAACAAGCGCAACAAAGTCGTAGTAAAGCAT-TAAGTGATGAGGATGAT 774
||| ||||||||| |||| ||| |||| | |||| || | | ||| || ||||||
Sbjct 920 ATATAGAGGAAAACCAAGAACAAGAAAG----A--AAAGTATGTGA-TGAGGAAGATGAT 972
Query 775 TGCATAGAGGAAGAAGTGGTGgaaaaagatcagagtgtattcagattcatagaga---ct 831
|||||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||
Sbjct 973 TGCATAGAGGAAGAAGTGGTGGAAGAAGATCAGAGTGTATTCAGATTTAGAGAGAGTACT 1032
Query 832 gaagaagagaaaaaagagagaaagaggtcaaggagaaaatcaagatcatcatcatcatca 891
||||| |||| ||||||||||||||||| |||||| ||| |||||||| | | ||||||
Sbjct 1033 GAAGATGAGAGAAAAGAGAGAAAGAGGTTAAGGAGGAAACCAAGATCAAC-T--TCATCA 1089
Query 892 tcaagTAGTCCAATTGCGAAAGACGTGGAATGTTGGAGGTACTACTACAAGGGAAAGAGA 951
||||| ||||| || |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1090 TCAAGCAGTCCTATCGCGAAAGACGTGGATTGTTGGAGGTACTATTACAAGGGAAAGAGA 1149
Query 952 AGTCGTCAAAAGAAAGAGTGTGGTAAATGTT---ACCATATAGTGTACAACGTGTTTACA 1008
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1150 AGTCGTCAAAGGAAAGAGTGTGGTAAATGTTGTTACCATATAGTGTACAACGTGTTTACA 1209
Query 1009 ATGTTTCCGGATCAAAAGGAAAGCGAAGAAGGCGAAAGAAGTTTGAAGAAAGCTATGCAT 1068
||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 1210 ATGTTGCCGGATCAAAAGGAAAGCGAAGAAGGAGAAAGAAGTTTCAAAAAAGCTATGCAT 1269
Query 1069 GTTCATCTTAAGCTTCCCGACTATGATCAGATTGTTGCTCACTTTACTGCTCTTAGGAaa 1128
||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1270 GTTCATCCTAAGCTTCCCGATTATGATCAGATTGTTGCTCACTTCACTGCTCTTAGGAAA 1329
Query 1129 caacaacaacaacaacaa 1146
|||||||||||| |||||
Sbjct 1330 CAACAACAACAAAAACAA 1347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56224610400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5