BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497547
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79510.1 | Symbols: | Uncharacterized conserved protein (DU... 1367 0.0
AT1G79500.5 | Symbols: AtkdsA1 | Aldolase-type TIM barrel famil... 697 0.0
AT1G16320.1 | Symbols: | Uncharacterized conserved protein (DU... 623 9e-178
> AT1G79510.1 | Symbols: | Uncharacterized conserved protein (DUF2358)
| chr1:29908013-29909332 REVERSE LENGTH=1243
Length=1243
Score = 1367 bits (740), Expect = 0.0
Identities = 851/901 (94%), Gaps = 22/901 (2%)
Strand=Plus/Plus
Query 1 AAAAAACGAACAGCTGTTTATCTTCCAACAAAGCTTCTTCGGGCATCTTCGCTCTTCTCA 60
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 AAAAAACGAGCAGCTGTTTATCTTCCAACAAAGCTTCTTCGTGCATCTTCGCTCTTCTCA 60
Query 61 ACTCATCCTCCTCTCCCTCTGA---T-TTACTTCGCCTTGAAAAATTAAG--------AC 108
|||| || |||||||||||||| | ||| |||||||||||||||||| ||
Sbjct 61 ACTCGTCATCCTCTCCCTCTGATTCTCTTAAGTCGCCTTGAAAAATTAAGACAAAACAAC 120
Query 109 AAGAGAA-AACAAGAGAAGCTCTAAACTCCAGCAGCTATGGCGTTTCTTCTCCCCAATCT 167
|| | || |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 AACAAAAGAACAAGAGAAGCTCTAAAATCCAGCAGCTATGGCGTTTCTTCTCCCCAATCT 180
Query 168 CTCTCCTTCTTTCCTTCTTCCGACCGGAAAATCACTCAAAGACAAACCCATTTCCAGCCA 227
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 181 CTCTCCTTCTTTCCTTCTTCCGACCGGAAAATCACTCAAAGAGAAACCCATTTCCAACCA 240
Query 228 AGCTTTatcatcatcatcatcatcGTCTTCTTCCAATAGCTACGAGTTTGACGAAGATAC 287
||||||||||||||||||||||||||| | ||||||||||||||||| |||||||
Sbjct 241 AGCTTTATCATCATCATCATCATCGTC--C----AATAGCTACGAGTTTGAAGAAGATAG 294
Query 288 TCTCTCTCCACTTTCTCTCTTTAGCGTCCAGGCTCCTCCTCCTGTTCGAGGTGCGCAGGT 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TCTCTCTCCACTTTCTCTCTTTAGCGTCCAGGCTCCTCCTCCTGTTCGAGGTGCGCAGGT 354
Query 348 TAAGACCAAACCGAGTGCGCAGGATAAGTACCAGCACGGCA--AA-GATGACTTCTACAT 404
|||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 355 TAAGACCAAACCAAGTGCGCAGGATAAGTACCAGCACGGCAGCAAAGATGACTTCTACAT 414
Query 405 CAATCTCGGTTTAGCTGTACGTACCCTTCGTGAAGATTTGCCTCTTCTCTTCACCAAAGA 464
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 415 CAATCTCGGTTTAGCTGTACGTACCCTTCGCGAAGATTTGCCTCTCCTCTTCACCAAAGA 474
Query 465 TCTCAATTACGACATTTACAGGGATGATATAACCTTTGTGGATCCAATGAACACATTCTC 524
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 475 TCTCAATTACGACATTTACAGGGATGATATAACATTAGTGGATCCAATGAACACGTTCTC 534
Query 525 TGGGATTGACAAGTACAAATTGATCTTCTGGGCACTCAGATTTCATGGCAAGATTCTCTT 584
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 535 TGGGATTGACAACTACAAATTGATCTTCTGGGCACTTAGATTTCATGGCAAGATTCTCTT 594
Query 585 CAGGGATATCTCACTTGAGATCTTCAGGGTTTGGCAACCATCAGAGAACATGATTCTCAT 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 CAGGGATATCTCACTTGAGATCTTCAGGGTTTGGCAACCATCAGAGAACATGATTCTCAT 654
Query 645 CAGGTGGAATCTTAAAGGTGTACCTAGAGTCCCATGGGAGGCAAAGGGTGAGTTTCAGGG 704
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 655 CAGGTGGAATCTTAAAGGTGTACCTAGAGTCCCATGGGAGGCAAAGGGAGAGTTTCAGGG 714
Query 705 TACTTCTCGCTATAAACTTGACCGAAACGGCAAAATCTATGAGCATAAAGTCGATAACTT 764
|||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 715 TACTTCTCGCTATAAACTCGACCGAAATGGCAAAATCTATGAGCATAAGGTCGATAACTT 774
Query 765 GGCCTTCAACTTCCCTCACCAGCTCAAACCTGCCACTTCCGTTTTGGATTTGGTCACTGC 824
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||
Sbjct 775 GGCCTTCAACTTCCCTCACCAGCTCAAACCTGCCACTTCTGTTTTGGATATGGTCACCGC 834
Query 825 TTGCCCTGCAAGTCCCAATCCAACTTTCATGTTTGGCGCCATGGATTCATACTCATCTTC 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TTGCCCTGCAAGTCCCAATCCAACTTTCATGTTTGGCGCCATGGATTCATACTCATCTTC 894
Query 885 T 885
|
Sbjct 895 T 895
> AT1G79500.5 | Symbols: AtkdsA1 | Aldolase-type TIM barrel family
protein | chr1:29903420-29909437 FORWARD LENGTH=2194
Length=2194
Score = 697 bits (377), Expect = 0.0
Identities = 464/502 (92%), Gaps = 22/502 (4%)
Strand=Plus/Minus
Query 1 AAAAAACGAACAGCTGTTTATCTTCCAACAAAGCTTCTTCGGGCATCTTCGCTCTTCTCA 60
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2089 AAAAAACGAGCAGCTGTTTATCTTCCAACAAAGCTTCTTCGTGCATCTTCGCTCTTCTCA 2030
Query 61 ACTCATCCTCCTCTCCCTCTGA---T-TTACTTCGCCTTGAAAAATTAAG--------AC 108
|||| || |||||||||||||| | ||| |||||||||||||||||| ||
Sbjct 2029 ACTCGTCATCCTCTCCCTCTGATTCTCTTAAGTCGCCTTGAAAAATTAAGACAAAACAAC 1970
Query 109 AAGAGAA-AACAAGAGAAGCTCTAAACTCCAGCAGCTATGGCGTTTCTTCTCCCCAATCT 167
|| | || |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1969 AACAAAAGAACAAGAGAAGCTCTAAAATCCAGCAGCTATGGCGTTTCTTCTCCCCAATCT 1910
Query 168 CTCTCCTTCTTTCCTTCTTCCGACCGGAAAATCACTCAAAGACAAACCCATTTCCAGCCA 227
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1909 CTCTCCTTCTTTCCTTCTTCCGACCGGAAAATCACTCAAAGAGAAACCCATTTCCAACCA 1850
Query 228 AGCTTTatcatcatcatcatcatcGTCTTCTTCCAATAGCTACGAGTTTGACGAAGATAC 287
||||||||||||||||||||||||||| | ||||||||||||||||| |||||||
Sbjct 1849 AGCTTTATCATCATCATCATCATCGTC--C----AATAGCTACGAGTTTGAAGAAGATAG 1796
Query 288 TCTCTCTCCACTTTCTCTCTTTAGCGTCCAGGCTCCTCCTCCTGTTCGAGGTGCGCAGGT 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1795 TCTCTCTCCACTTTCTCTCTTTAGCGTCCAGGCTCCTCCTCCTGTTCGAGGTGCGCAGGT 1736
Query 348 TAAGACCAAACCGAGTGCGCAGGATAAGTACCAGCACGGCA--AA-GATGACTTCTACAT 404
|||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1735 TAAGACCAAACCAAGTGCGCAGGATAAGTACCAGCACGGCAGCAAAGATGACTTCTACAT 1676
Query 405 CAATCTCGGTTTAGCTGTACGTACCCTTCGTGAAGATTTGCCTCTTCTCTTCACCAAAGA 464
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1675 CAATCTCGGTTTAGCTGTACGTACCCTTCGCGAAGATTTGCCTCTCCTCTTCACCAAAGA 1616
Query 465 TCTCAATTACGACATTTACAGG 486
||||||||||||||||||||||
Sbjct 1615 TCTCAATTACGACATTTACAGG 1594
Score = 579 bits (313), Expect = 2e-164
Identities = 340/353 (96%), Gaps = 1/353 (0%)
Strand=Plus/Minus
Query 479 TTTACAGGGATGATATAACCTTTGTGGATCCAATGAACACATTCTCTGGGATTGACAAGT 538
||| ||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |
Sbjct 1523 TTT-CAGGGATGATATAACATTAGTGGATCCAATGAACACGTTCTCTGGGATTGACAACT 1465
Query 539 ACAAATTGATCTTCTGGGCACTCAGATTTCATGGCAAGATTCTCTTCAGGGATATCTCAC 598
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1464 ACAAATTGATCTTCTGGGCACTTAGATTTCATGGCAAGATTCTCTTCAGGGATATCTCAC 1405
Query 599 TTGAGATCTTCAGGGTTTGGCAACCATCAGAGAACATGATTCTCATCAGGTGGAATCTTA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 TTGAGATCTTCAGGGTTTGGCAACCATCAGAGAACATGATTCTCATCAGGTGGAATCTTA 1345
Query 659 AAGGTGTACCTAGAGTCCCATGGGAGGCAAAGGGTGAGTTTCAGGGTACTTCTCGCTATA 718
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1344 AAGGTGTACCTAGAGTCCCATGGGAGGCAAAGGGAGAGTTTCAGGGTACTTCTCGCTATA 1285
Query 719 AACTTGACCGAAACGGCAAAATCTATGAGCATAAAGTCGATAACTTGGCCTTCAACTTCC 778
|||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1284 AACTCGACCGAAATGGCAAAATCTATGAGCATAAGGTCGATAACTTGGCCTTCAACTTCC 1225
Query 779 CTCACCAGCTCAAACCTGCCACTTCCGTTTTGGATTTGGTCACTGCTTGCCCT 831
||||||||||||||||||||||||| ||||||||| ||||||| |||||||||
Sbjct 1224 CTCACCAGCTCAAACCTGCCACTTCTGTTTTGGATATGGTCACCGCTTGCCCT 1172
> AT1G16320.1 | Symbols: | Uncharacterized conserved protein (DUF2358)
| chr1:5580855-5582143 FORWARD LENGTH=1129
Length=1129
Score = 623 bits (337), Expect = 9e-178
Identities = 614/741 (83%), Gaps = 46/741 (6%)
Strand=Plus/Plus
Query 115 AAAC-AAGA-GAAGCTCT-AAACTCCAGCAGCTATGGCGTTTCTTCTCCCCAATC--TC- 168
|||| |||| | |||||| ||| ||||||||| ||||| |||||||| | |||| ||
Sbjct 66 AAACAAAGACG-AGCTCTCAAA-TCCAGCAGCAATGGCTTTTCTTCTTTCTAATCTATCA 123
Query 169 TCTCCTTCTTTCCTTCTTCCGACCGGAAAATCACTCAAAGAC--AAACCCATTTCCAGCC 226
||||| || ||| ||||| |||||||||| || |||| | |||||||||| ||| |
Sbjct 124 TCTCCGTCAATCCATCTTCAAACCGGAAAAT-ACCCAAA-CCTTAAACCCATTTTCAGTC 181
Query 227 AAGCTTTatcatcatcatcatcatcGTCTTCTTCCAATAGCTACGAGTTTG-ACGAAGAT 285
| ||| || | ||| || |||||||| | ||||||||| |||| | |||||
Sbjct 182 -A-----ATC-TC-T-ATCGTCTTCGTCTTC-T--GTTAGCTACGAATTTGTA-GAAGAG 228
Query 286 ACTCTCTCTCCACTTTCTCTCTTTAGCGTCCAGGCTCCTCCTCCTGTTCGAGGTGCGCAG 345
| ||| ||| |||| ||||| || ||| |||| | | |||||||| || || ||||
Sbjct 229 AATCTATCTACACTCTCTCTATTGAGCATCCA-G-T-CTCCTCCTCTTAAAGACACGCAA 285
Query 346 GTTAAGACCAA-AC-CGAGTGCGCAGGATAAG--T-ACCAGCACGGCAAAGATGACTTCT 400
||| ||| ||| || | ||| |||| |||||| | | | |||| || |||||| ||||
Sbjct 286 GTTCAGA-CAAGACAC-AGTTCGCAAGATAAGCATAATAACCACGACAGAGATGAATTCT 343
Query 401 ACATCAATCTCGGTTTAGCTGTACGTACCCTTCGTGAAGATTTGCCTCTT-CTCTTCACC 459
| |||||||| ||| | ||||| ||||| |||||||||||||||||| || ||||||||
Sbjct 344 ATATCAATCTTGGTGTCGCTGTCCGTACACTTCGTGAAGATTTGCCT-TTGCTCTTCACT 402
Query 460 AAAGATCTCAATTACGACATTTACAGGGATGATATAACCTTTGTGGATCCAATGAACACA 519
| |||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 403 AGAGATCTTAATTACGACATCTACAGGGATGATATAACATTTGTGGATCCGATGAACACA 462
Query 520 TTCTCTGGGATTGACAAGTACAA-ATTGATCTTCTGGGCACTCAGATTTCATGGCAAGAT 578
||| ||||||| ||||| ||||| ||| |||||||||||||||||||||||||| |||||
Sbjct 463 TTCACTGGGATGGACAACTACAAGATT-ATCTTCTGGGCACTCAGATTTCATGGGAAGAT 521
Query 579 -TCTCTTCAGGGATATCTCACTTGAGATCTTCAGGGTTTGGCAACCATCAGAGAACATGA 637
| | ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 522 AT-TGTTCAGAGATATCTCACTTGAGATCTTCAGAGTATGGCAACCATCAGAGAACATGA 580
Query 638 TTCTCATCAGGTGGAATCTTAAAGGTGTACCTAGAGTCCCATGGGAGGC-AAAGGGTGAG 696
||||||||||||||||||| || ||||| |||||||| |||||||| || ||||| |||
Sbjct 581 TTCTCATCAGGTGGAATCTCAAGGGTGTGCCTAGAGTTCCATGGGAAGCTAAAGGA-GAG 639
Query 697 TTTCAGGGTACTTCTCGCTATAAACTTGACCGAAACGGCAAAATCTATGAGCATAAAGTC 756
||||| || |||||||| |||||||| ||||| || ||||||||||||||||||||||||
Sbjct 640 TTTCAAGGCACTTCTCGGTATAAACTCGACCGTAATGGCAAAATCTATGAGCATAAAGTC 699
Query 757 GATAACTTGGCCTTCAACTTCCCTCACCAGCTCAAACCTGCCA-CTTCCGTTTTGGATTT 815
||||||||||||||||| |||||||| |||||||||||||| | |||| |||||||||||
Sbjct 700 GATAACTTGGCCTTCAATTTCCCTCAACAGCTCAAACCTGC-AGCTTCGGTTTTGGATTT 758
Query 816 GGTCACTGCTTGCCCTGCAAG 836
||| ||||||| |||||||||
Sbjct 759 GGTGACTGCTTCCCCTGCAAG 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43201366420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5