BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497550
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39490.1 | Symbols: | F-box family protein | chr2:16486902-... 1652 0.0
> AT2G39490.1 | Symbols: | F-box family protein | chr2:16486902-16488645
REVERSE LENGTH=1594
Length=1594
Score = 1652 bits (894), Expect = 0.0
Identities = 1096/1188 (92%), Gaps = 35/1188 (3%)
Strand=Plus/Plus
Query 80 AGTTACACGTTGACAAGTCAGCCTTCGTGTCCACTATTCTCGCACCTCATAACGTCATGC 139
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 432 AGTTACACGTTGACAAGTCAACCTTCGTGTCCACTATTCTCGCACCTCATAACGTCATGC 491
Query 140 ATATGAGCTTCTTCTTCTCTGGTGGTTCTAACAAAGAAGAGAGCTTTTGCTGGCGTCTTG 199
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 492 ATATGAGCTTCTTCTTCTCCGGTGGTTCTAAGAAAGAAGAGAGCTTTTGCTGGCGTCTTG 551
Query 200 AGATCAACGATCAGATCCCAAGACGTGTGGACTCAAGCGGTTTCTTGGTGAAGACGCTTT 259
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 AGATCGACGATCAGATCCCAAGACGTGTGGACTCAAGCGGTTTCTTGGTGAAGACGCTTT 611
Query 260 GTTTAGACTCGGTGAATTCGTTAACCCACGAGGTCGTTTCCTCCATGGTATTGGAATTTT 319
|||||||||| || ||||| |||||||| ||||| |||||||| ||||| ||||||||||
Sbjct 612 GTTTAGACTCCGTTAATTCCTTAACCCATGAGGTTGTTTCCTCAATGGTTTTGGAATTTT 671
Query 320 CTTTACTTGATAGCCTCAAGATTTGTGGTTGCAAGGGATTGACTTCTCTCACTATTGATT 379
|||||||||| ||||||||||||||| |||| ||| ||||||||||||||||||||||||
Sbjct 672 CTTTACTTGACAGCCTCAAGATTTGTCGTTGTAAGAGATTGACTTCTCTCACTATTGATT 731
Query 380 CACCAACTAAGCTTCTTCACTTATCAATCTCGGGATGCCCGAAGCTGAGATATCTCGAGA 439
|||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||
Sbjct 732 CACCAACTAAGCTTCTTCACTTGTCCATCTCGGGATGCCCGAAGCTGAGATACCTCGAGA 791
Query 440 TCAGATCATTTAAGCTTAAAACTTTTCATTACCAAGGATCTCTACCTTTGATCAAGATTC 499
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 TCATATCATTTAAGCTTAAAACTTTTCATTACCAAGGATCTCTACCTTTGATCAAGATTC 851
Query 500 ATGAACATTTCAACTTGACCAAGGCGATTTTCGACGTAACACAAGGTCCAAGTTATTACA 559
|||||||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||
Sbjct 852 ATGAACATTTCAACTTGACCAAGGCGGTTTTCGATGTAACACAAGGCCCAAGCTATTACA 911
Query 560 ACAACG-GTTTAGACATCGGTCCTCTCTCGCTGATCATCAAGAATTCTCAATATCTTACA 618
|||||| | ||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 912 ACAACGCG-TTAGACATCGGTCCTCTCTCGCTGACCATCAAGAATTCTCAATCTCTTACA 970
Query 619 CTTTGCAGATGGATGTTCGAGGAAGTAATCAAACCGTCCATATCATCATCTTGGAGATCA 678
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 CTATGCAGATGGATGTTCGAGGAAGTAATCAAACCGTCCATATCATCATCTTGGAGATCA 1030
Query 679 TTCCAATTCTACAAGTTACAAGAATTGCGGTGGATCGATAACTCGATGAACCAAGAA-AA 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1031 TTCCAATTCTACAAGTTACAAGAATTGCGGTGGATCGATAACTCGATGAACCAAGAACAA 1090
Query 738 CATTAATTCCATGATTTCTTTTCTCAAACTTTGCCCATCAATCGAGCGCCTCTTCATTGA 797
|||||||| |||| ||||||||||||||||| |||||||| ||||||||||||||| |
Sbjct 1091 -ATTAATTCTTTGATCTCTTTTCTCAAACTTTGTCCATCAATAGAGCGCCTCTTCATT-A 1148
Query 798 -TATCGATTCAAATACTTATAGTTCAAACGAAGAAGTTAGTGTTGATGCTGTCCATGCAT 856
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1149 CTATCGATTCAAATACTTATAGTTCAAACGAAGAAGTTAGTGTTAATGCTGACCATGCAA 1208
Query 857 GCGAGCATGCAAGAGTACTAAGGGATCT-GAAACTGGTCAAATTGGAAGGATTCGAGAGT 915
| || | | | ||||||||||||| ||| |||||||||||||||||||| |||||
Sbjct 1209 G--AG--T--A-G--TACTAAGGGATCTAGAAG-TGGTCAAATTGGAAGGATTCAAGAGT 1258
Query 916 GAAGATA-ATAAAAATCAACTGATATTGGCTCTACAACAGATAGTCAGTAAT-GATCAGC 973
||||| | |||| |||||||||||||| ||||||||| |||||||||||| | |||||||
Sbjct 1259 GAAGA-AGATAAGAATCAACTGATATTTGCTCTACAAGAGATAGTCAGTA-TCGATCAGC 1316
Query 974 TTCTGCTTGTACTGTCTTCGATTTCTTGAGATCGATACTCTGACTTGGAATGGAAACGAC 1033
|||||||||||||||||| ||||||||| | | || | |||||||||||||||||
Sbjct 1317 CTCTGCTTGTACTGTCTTCAATTTCTTGA---C--T--TCGG-CTTGGAATGGAAACGAC 1368
Query 1034 AAAAGATTTATGTCTAAATATACACGCATGAACATGCTTTAATTAATCTGCTGTCATTTT 1093
|||||| ||||||||||| ||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1369 AAAAGAGTTATGTCTAAAGATACACGTATGAACATGCTTTAATTAACCTGCTGTCATTTT 1428
Query 1094 AACGCGTGGAT-T---CCTATTTCTTGCTGTACAAGAAACCCTCGTGTAAACTGAACTCA 1149
||||||||||| | || |||||||||| ||||||||| |||||||||||| ||||| |
Sbjct 1429 AACGCGTGGATATATTCC-ATTTCTTGCTATACAAGAAATCCTCGTGTAAACGGAACTTA 1487
Query 1150 AATTTGGCTTCGTCAAGTTCGCAGATTTAAAGATTTTTCACCAGTATGTATTATTCTAAT 1209
||||||||| ||||||||| |||||| ||||||||||||||||||||||||||| ||||
Sbjct 1488 AATTTGGCTACGTCAAGTTTACAGATT-AAAGATTTTTCACCAGTATGTATTATTGTAAT 1546
Query 1210 GTATTTACTATGATATATTAATTAAAACAACATCAAGTTGATTTTCGC 1257
||| ||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1547 GTACTTACTATGATAAATTACTTAAAACAACATCAAGTTGATTTTCGC 1594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61796870895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5