BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg497552

Length=443
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G49550.1 | Symbols: BLOS2 | Putative homolog of mammalian BL...   691    0.0  


> AT5G49550.1 | Symbols: BLOS2 | Putative homolog of mammalian 
BLOC-1 Subunit 2. Protein - protein interaction with BLOS1. 
| chr5:20106653-20107191 REVERSE LENGTH=468
Length=468

 Score =  691 bits (374),  Expect = 0.0
 Identities = 423/446 (95%), Gaps = 5/446 (1%)
 Strand=Plus/Plus

Query  1    TATCCTCATCAATGGCGGATTCACGAGATGATCTAGCTGAATCGCTACAGAATCTATTCA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  25   TATCCTCATCAATGGCGGATTCACGAGATGATCTAGCTGAATCGCTACAAAATCTATTCA  84

Query  61   CGAGTGTTTCATCTATGGTCAAATCCGAGCTCCAGGGAACGAACAATCATCTAGATCTAT  120
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  85   CGAGTGTTTCATCTATGGTCAAATCCGAGCTCCAGGGAACGAACAACCATCTAGATCTAT  144

Query  121  TGGAGAAGATGAATCAGAGAGTTGCGTCGGAGTACGATGATATGGGTGACGTGGCAGCTG  180
            ||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||
Sbjct  145  TGGAGAAGATGAACCTGAGAGTTGCGTCAGAGTACGATGATATGGGTGACGTGGCAGCTG  204

Query  181  GGCTCAGAGTTTTCGCAGAGCAGATGAAATCAAAAAGTGGTGGCTTGGATGAATTTGTCG  240
            ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct  205  GGCTCAGAGTTTTCGCAGAACAGATGAAATCAAAAAGTGGTGGCTTGGATGAATTTGTAG  264

Query  241  GACAAATGGATGCAATCGAGAAACAAGTGTCGGAATTTGAAGCTGTGATCTCTGTTCTAG  300
            ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  265  GACAAATGGATGCTATCGAGAAACAAGTGTCGGAGTTTGAAGCTGTGATCTCTGTTCTAG  324

Query  301  ATCGATATGTCTCTGTCCTAGAATCTAAAATCCGAGCTGAGTATCGtcatcatcatcatc  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  325  ATCGATATGTCTCTGTCCTAGAATCTAAAATCCGAGCTGAGTATCGTCATCCTCATCATC  384

Query  361  atcGTCGCTCTAATGACTCTGTTGGTACAGATTGAGGCAATTTGTAACAATAATTAATT-  419
            | |||||||||||||| ||||||| |||||| ||| ||| || ||| |||||||||||| 
Sbjct  385  AGCGTCGCTCTAATGATTCTGTTGTTACAGACTGATGCA-TT-GTAGCAATAATTAATTT  442

Query  420  --ATCGCTACTGAGATTGTTGGAATC  443
              |||  |||||||||||||||||||
Sbjct  443  TTATCATTACTGAGATTGTTGGAATC  468



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21062186831


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5