BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497554
Length=1350
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36000.1 | Symbols: | Mitochondrial transcription terminati... 1993 0.0
> AT2G36000.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr2:15117075-15118627 FORWARD
LENGTH=1461
Length=1461
Score = 1993 bits (1079), Expect = 0.0
Identities = 1282/1374 (93%), Gaps = 38/1374 (3%)
Strand=Plus/Plus
Query 1 ATGTGAGATGTCTCTTGAACAATGCAACAAGAAGctctctctttcctctcttcctctttc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 86 ATGTGAGATGTCTCTTGAACAATGCAACAAGAAGCTCTCTCTTTCCTCTCGTCCTCTCTC 145
Query 61 ccttcccttcaccacaattttcccacactttctcGCCTCCGCTTCCACAATTTTCCCGCA 120
|||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||
Sbjct 146 CCTTCCCTTCACCACAATTTTCCCTCTCTTTCTCGCCTCCGCTTCAACAATTTTCCCGCA 205
Query 121 CTTTCCTTCAAACCAAACAC-T--TC-T--TCTTCATCACTCTTCAAATCCCCAAATAT- 173
|||||||||||||||||||| | || | ||||||||| |||||||||||||| ||||
Sbjct 206 CTTTCCTTCAAACCAAACACTTCATCATCATCTTCATCATTCTTCAAATCCCCAGATATA 265
Query 174 CCC-CTCTCT-CTCC-TC-C-AC--C-ACAGCAACCACCGAAACCCTAGAATCCTCAATC 225
||| |||||| |||| | | || | ||| |||||||||||||||||||||||||||||
Sbjct 266 CCCTCTCTCTCCTCCACCACAACAACAACAACAACCACCGAAACCCTAGAATCCTCAATC 325
Query 226 CACGAGAAACTCATTTACCTCGATTCACTCGGAATCGATTTCTTAACCCTAATCAACCGT 285
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 326 CACGAGAAACTCATTTACCTCGATTCACTCGGAATCGATTTCCTAACCCTAATCAACCGT 385
Query 286 CATCCTCCTCTCCTCTCCACCGCTCTCTCCGCCGTTGAATCCGTCGTCGATTACATGACC 345
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 386 CATCCACCTCTCCTCTCCACCGCTCTCTCCGCCGTTGAATCAGTCGTCGATTACATGACC 445
Query 346 ACTCCACCAATCAACTTCACCTTACAAGATTTTCGCCGCCTCGTCTCCATGTGTCCCGAG 405
||||||||||| |||||||| |||||||| ||||||||||||||||| |||||||| |||
Sbjct 446 ACTCCACCAATAAACTTCACTTTACAAGACTTTCGCCGCCTCGTCTCAATGTGTCCAGAG 505
Query 406 CTTCTCACTTCACCGTTAACCTCACACACAATCCCAGTCATCACTTTCCTCCTCCGTGAA 465
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 CTTCTCACTTCACCTTTAACCTCACACACAATCCCAGTCATCACTTTCCTCCTCCGTGAA 565
Query 466 GTCGGCGTTGACTCTATCTTTGACCTCCGTCAAGCTTTACGTCGTCGTCCTCGTCTTCTC 525
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 566 GTCGGCGTTGACTCTATCTTTGACCTCCGTCAAGCTTTACGACGTCGTCCTCGTCTTCTC 625
Query 526 GCTTGTAGCGTCGATCACCAGCTTCGACCAACGCTTTACTTTCTCCAGAGAATCGGAATC 585
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 626 GCTTGTAGCGTCGATCACCAGCTTAGACCAACGCTTTACTTTCTCCAGAGAATCGGAATC 685
Query 586 TTAGATCCGCATAAACATACGTATCTTCTCTCTTGTAGCGTTGAAC-ATAAACTCGTACC 644
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 686 TTAGATCCGCATAAACATACGTATCTTCTCTCTTGTAGCGTTG-ACAATAAACTCGTACC 744
Query 645 ACGGATTGATTTCTTTGAGAAGTTAGGATTCTCGCGGCGGAGCGCCACCGCGATGTTTAA 704
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 ACGGATTGATTACTTCGAGAAGTTAGGATTCTCGCGGCGGAGCGCCACCGCGATGTTTAA 804
Query 705 GAGATTCCCGCAGCTGTTTAATTACAGTATTGCTGAGAATTATGAGCCAAAGTTGAAGTA 764
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 805 GAGATTCCCGCAGCTGTTTAATTACAGTATTGCTGAGAATTATGAGCCGAAGTTGAAGTA 864
Query 765 TTTGATGGTGGAGATGGAGAGAGATGTTAGAGAGGTTCTTGAGTTTCCTCAGTATTTTTC 824
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 865 TTTGATGGTGGAGATGGGGAGAGATGTTAGAGAGGTTCTTGAGTTTCCTCAGTATTTCTC 924
Query 825 GTTTAGTTTGGAGAATCGGATTAAACCGAGACATGAAGCTTGTGCGGCGAAAGGTGTGAG 884
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 925 GTTTAGTTTGGAGAATCGGATTAAACCGAGACATGAAGCTTGTGCTGCGAAAGGTGTGAG 984
Query 885 GTTTCCATTGCCGGTGATGTTGAAGACGAATGAAGCTGGTTTTAGAGATACATTGGAGGT 944
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 985 GTTTCCATTGCCGGTGATGTTGAAGACTAATGAAGCTGGTTTTAGAGATACATTGGAGGT 1044
Query 945 ATGTTGTGATTCTTCTCCGCCATTGAAGACATCTCGCCTTGTTACTGTACAAAA-GATTC 1003
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1045 ATGTTGTGATTCTTCTCCGCCATTGAAGACCTCTCGCCTTGTTACTGTACAAAAAGATTC 1104
Query 1004 TTGATTTATAGAGTTTTGTGTGCTAGGAACTTGGAACATGGAAGCAAGTACATTTTTGTA 1063
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1105 TTGATTTATAGAGTTTTGTGTGCTAGGA----G-AACATGGAAGCAAGTACATTTTTGTA 1159
Query 1064 ATGAATGATTCTGGAGGAACTCAAAGAATGAAGAAACCGGCCTCTGCCTACATTTAGAGA 1123
||||||||| || || ||||||| ||||||||||||| |||||||||||||||| ||||
Sbjct 1160 ATGAATGATGATGAAG-AACTCAATGAATGAAGAAACCAGCCTCTGCCTACATTTTGAGA 1218
Query 1124 G-CG-AG-GGAGATGGTGAAATTGTATCTTTGATAGGAGAAAGAGTGTTCATTTACAAT- 1179
| | || |||||||| || ||||| |||| |||||||| ||||||||||||||
Sbjct 1219 CACACACAGG-GATGGTGAG-TTAAATCTT-GATAAGAGAAAGAATGTTCATTTACAATT 1275
Query 1180 -A-GAATTTCCAATGTTTTTTCGGTCTACTTATCGTT-GTGACCAAGCAATCAAGTGTAT 1236
| || || || |||| ||| ||||||| |||| ||| |||| | || ||||||||||||
Sbjct 1276 CACGA-TT-CCGATGTATTT-CGGTCTAGTTATTGTTAGTGAACGAGAAATCAAGTGTAT 1332
Query 1237 GTAAGTCCAGAAACCTTGTAGAGTTGCGATTTGCAGAGAAGTGTGAATTCTACAATTGGA 1296
||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1333 GTAAGTCCAGAAACCGTGTAGAGTTGCGATTTGCAGAGAATTGTGA-TTCTACAATTGGA 1391
Query 1297 GGCAGGATGATGAATGTGTAAACTGATTAGCGTAACGGTTTAGTGATTGGTCTT 1350
|||| |||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1392 GGCAAGATGATGAATGTGTGAACTGATTAGCGTAACGGTTTAGTTATTGGTCTT 1445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66465521580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5