BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497572
Length=968
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58730.1 | Symbols: | pfkB-like carbohydrate kinase family ... 784 0.0
> AT5G58730.1 | Symbols: | pfkB-like carbohydrate kinase family
protein | chr5:23723404-23725465 REVERSE LENGTH=1426
Length=1426
Score = 784 bits (424), Expect = 0.0
Identities = 514/557 (92%), Gaps = 8/557 (1%)
Strand=Plus/Plus
Query 1 ACGTTACGTATTAGCTTATAGCCATTATTAGTTTTGTCTCTTCTAC-TAGT-TCGTTGGT 58
||||||||||||||||||||||| |||||||||||||||||| | | | ||||||||
Sbjct 1 ACGTTACGTATTAGCTTATAGCC---ATTAGTTTTGTCTCTTCTTCTTCTTCTCGTTGGT 57
Query 59 CGTCTTCTTCGTCTTAGTAATTCCATGA---TTCTTCTTCCTTCTGCTTCACCTTCCCGA 115
|| ||||||||||||| ||||||||||| ||||||||||||||||||||| ||| |||
Sbjct 58 CGGCTTCTTCGTCTTACTAATTCCATGATTCTTCTTCTTCCTTCTGCTTCACTTTCTCGA 117
Query 116 TGACCCTCTGCACAAGCCGCGATCATGACGCTAAATCCTCCTCCGTCGCAGCAAACGCCT 175
||| ||||||||| |||||||||||||||| | |||||||||||||||||||||||| ||
Sbjct 118 TGATCCTCTGCACCAGCCGCGATCATGACGTTGAATCCTCCTCCGTCGCAGCAAACGTCT 177
Query 176 CAGTCGCCGCGTCGGATTCCCAATCGCCGCGTTCTCATCGTCGGGAATTACTGCCACGAC 235
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 178 CACTCGCCGCGTCGGATTCCCAATCGCCGCGTTCTCATCGTCGGAAATTATTGCCACGAC 237
Query 236 GTTCTGATCCAAAACGGATCCGTCGTAGCTGAAACACTCGGCGGCGCCGCCTCTTTCATC 295
||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 238 GTTTTAATCCAAAACGGATCCGTCGTAGCTGAAACTCTCGGCGGCGCCGCCTCTTTCATA 297
Query 296 TCTAATGTCCTAGATTCTTCCTCTGTATCCTGCGAATTGGTCTCCAAAGTCGGACACGAC 355
||||||||| |||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 298 TCTAATGTCTTAGATTCTTCCTCTGTCTCCTGCGATTTGGTCTCCAAAGTAGGACACGAC 357
Query 356 TTCAGATACGAGGTTATCCACTCTCCGATCGTGGCTCCGGACAAAGAAACCACAATTTTC 415
|||||||||||||| | |||||||||||||||||||||||| || ||||| ||| |||||
Sbjct 358 TTCAGATACGAGGTCACCCACTCTCCGATCGTGGCTCCGGAGAAGGAAACAACAGTTTTC 417
Query 416 GAGGCGTATTTCGATCTGGGAATCGATGGGATCGGTCACGCTGATCGGGTGTTGAAACGG 475
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 418 GAGGCGTATTTCGATCTGGGAATCGATGGGATCGGTCATGCTGATCGGGTGTTGAAAAGA 477
Query 476 GTCTCTGCATGTGATCCGATTCTTCCTTCGGATATACCCGATTCGAGATTCGATTTCGGG 535
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 478 GTCTCTGCATGTGATCCGATTCTTCCTTCGGATATACCCGATTCGAGATTTGATTTCGGA 537
Query 536 ATGGCTGTTGGAGTCGG 552
||||| |||||||||||
Sbjct 538 ATGGCCGTTGGAGTCGG 554
Score = 392 bits (212), Expect = 3e-108
Identities = 284/315 (90%), Gaps = 20/315 (6%)
Strand=Plus/Plus
Query 604 AGTCAAGGATGAGGTACAGAAAAGGAAGAAGCAATGTAACCTCTCTAGCAGCCATAAAAA 663
|||||||||||||||||||| |||||||||||| |||||| | |||||||||||||| ||
Sbjct 1029 AGTCAAGGATGAGGTACAGAGAAGGAAGAAGCAGTGTAACATATCTAGCAGCCATAACAA 1088
Query 664 TGATCACAATGAGTTCCATGAGCGTCTAAGTCCAGCTCGGTTTTCATGCGTAGACTCTCA 723
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 CGATCACAACGAGTTCCATGAGCGTCTAAGTCCAGCTCGGTTTTCATGCGTAGACTCTCA 1148
Query 724 ACTTCAACCAAAGTTATTGGTCAATGGTCACTCCTGTGACAGGTGAATGATCGGTCCCGG 783
||||||||||||||||||||||||||||||||| | || ||| ||||||||||| |
Sbjct 1149 ACTTCAACCAAAGTTATTGGTCAATGGTCACTC-T-TG-----TGA-TGATCGGTCCCTG 1200
Query 784 TGAATACGAATCTTGAATCAC-T-------ACTAACAAAGCTCTTCTGAGTTGTGTAAGC 835
||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1201 TGAATACGAATCTTGAATCACCTTTTTTTTACTAACAAAGCTCTTCTGAGTTGTGTAAGC 1260
Query 836 TT-C--CA-CACGTTGATGAATTTTGGAAATTTTAGTGTATAAAACGCGATGACCATCGT 891
|| | || |||||||||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 1261 TTGCTTCAACACGTTGATGAATTTTGGAAATTTTAATGTATAAAACGCGTTGACCAGCGT 1320
Query 892 CTTCAAACGCTCTTT 906
|||||||||||||||
Sbjct 1321 CTTCAAACGCTCTTT 1335
Score = 56.5 bits (30), Expect = 5e-07
Identities = 33/34 (97%), Gaps = 1/34 (3%)
Strand=Plus/Plus
Query 552 GTGTGGTGGTGACTAATGGTGAAAAAGGGT-TAG 584
|||||||||||||||||||||||||||||| |||
Sbjct 782 GTGTGGTGGTGACTAATGGTGAAAAAGGGTGTAG 815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47370800621
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5