BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887296
Length=636
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42390.1 | Symbols: | protein kinase C substrate, heavy cha... 933 0.0
> AT2G42390.1 | Symbols: | protein kinase C substrate, heavy chain-related
| chr2:17651253-17652588 REVERSE LENGTH=846
Length=846
Score = 933 bits (505), Expect = 0.0
Identities = 597/641 (93%), Gaps = 7/641 (1%)
Strand=Plus/Plus
Query 1 ATGCTGCTGCAATGCGTCGTGTTGTGTTCGTTACTCGCCATCGTCGTCGTCTCCGTCGCT 60
||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct 80 ATGCTGCTGCAATGCGTCGTGTTGTGTTCGTCACTCGCCGTCGTCGTCATCTCCGTCGCT 139
Query 61 TCGATCTCTCCCCTC---GGTGTTCACCCTTTAGATGAAAAATATTTCGACTCAGATATT 117
|||| |||||||||| ||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 140 TCGACCTCTCCCCTCGTTGGTGTTCACCCTTTAGATGAAAAGTATTTCGACTCAGATGTT 199
Query 118 ATCAAATGCAAAGATGGCTCCAAATCTTTCTCTAA-AGATCGTCTCAACGACAACTTCTG 176
|||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct 200 ATCAAATGCAAAGATGGCTCCAAATCTTTCAC-AAGAGATCGTCTCAACGACAACTTCTG 258
Query 177 CGATTGTCTCGATGGCACCGATGAGCCTGGAACTTCAGCATGTCCAAATGGCAAATTTTA 236
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 259 CGATTGTCTCGACGGCACCGATGAGCCTGGAACTTCGGCATGTCCAAATGGCAAATTTTA 318
Query 237 CTGTAGAAACATTGGAAGTTCTCCAAAGTTTGTTTACTCTTCTCGTGTGAACGATCGTAT 296
|||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 319 CTGTAGGAACATTGGAAGTTCTCCAAAGTTCGTTTACTCTTCTCGTGTGAATGATCGAAT 378
Query 297 CTGTGATTGTTGCGATGGAAGCGACGAGTACGAAAGTAGCATTCATTGTCCCAACACATG 356
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 379 CTGTGATTGCTGCGATGGAAGCGACGAGTACGAAAGTAGCATTCATTGTCCCAACACTTG 438
Query 357 TGTAATGGGTGGTAACGTTAACTATATCTATAAACCTAGAACCAACCTTAAATCTATCCA 416
| |||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||
Sbjct 439 TATAATGGGTGGTAACGTTAACTACATCTACAAACCTAGAGCCAACCTTAAATCTATACA 498
Query 417 CTTCCAACTCGGTTCAACACTTCATCCAAAAGAGTCTTATACCATGGGGAATCTTCAGGA 476
||| |||||||||||||| | ||||||||| |||| |||||| || || |||||||||||
Sbjct 499 CTTGCAACTCGGTTCAACGCCTCATCCAAAGGAGTTTTATACTATAGGAAATCTTCAGGA 558
Query 477 CATGGTCAAGAATCTCCAAGGTATGAAGCTTGTCTTCGCCCTTCAGATGGTTTTTATCGG 536
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 559 CATGGTCAAGAATCTACAAGGTATGAAGCTTGTTTTCGCTCTTCAGATGGTTTTTATCGG 618
Query 537 TTTCTTAGTGATCTTATGGATGCTTACGCGCCGTGCTCGGTCTAAGAGGA-GACGTTATC 595
|||||||||||||||||||||||||| | | ||||||||||||||||| | |||| ||||
Sbjct 619 TTTCTTAGTGATCTTATGGATGCTTAGGAGTCGTGCTCGGTCTAAGAG-ACGACGCTATC 677
Query 596 TGCTGAAGAATGTATCTCCCAGTAATAGATCAGCTAACTAA 636
|||||||||||||| |||||| |||||||||||||||||||
Sbjct 678 TGCTGAAGAATGTACCTCCCATTAATAGATCAGCTAACTAA 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30693063817
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5