BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887298
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42410.1 | Symbols: ZFP11, ATZFP11 | zinc finger protein 11 ... 1044 0.0
> AT2G42410.1 | Symbols: ZFP11, ATZFP11 | zinc finger protein 11
| chr2:17658150-17658794 FORWARD LENGTH=645
Length=645
Score = 1044 bits (565), Expect = 0.0
Identities = 621/648 (96%), Gaps = 3/648 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAGGACACATTTGGCAAGTTTCAGCAACACAAACAAAACCCaagaagaagaagaa 60
|||||||| ||||||||||||||||| || |||| | ||||||||||||||||||||| |
Sbjct 1 ATGAAGAGAACACATTTGGCAAGTTTTAGTAACAGAGACAAAACCCAAGAAGAAGAAGGA 60
Query 61 gaagaCACTAATATTGGTGACAACAGAGTCATCATGAATCACTACAAGAATTACGAAGCT 120
|||||| | | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGACGGT-A-A-TGGTGACAACAGAGTCATCATGAATCACTACAAGAATTACGAAGCT 117
Query 121 GGGCTGATCCCATGGCCTCCCAAGAACTACACTTGCAGCTTCTGCAGGAGAGAGTTTAGA 180
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 118 GGGCTGATCCCATGGCCTCCCAAGAATTACACTTGCAGCTTCTGCAGGAGAGAGTTCAGA 177
Query 181 TCTGCTCAAGCACTTGGAGGCCACATGAATGTCCATAGAAGAGACAGAGCAAAACTCAGA 240
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 178 TCTGCTCAAGCACTTGGAGGCCACATGAATGTTCATAGAAGAGACAGAGCAAAACTCAGG 237
Query 241 CAGATCCCTTCTTGGCTCTTCGAACCTCACCACCACATACCTATTGGAAACCCTAACCCT 300
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 238 CAGATCCCTTCTTGGCTCTTCGAACCTCACCACCACACACCTATTGCAAACCCTAACCCT 297
Query 301 AATTTTAGCTCTTCTTCTTCCTCTTTAACAACACCAGCTCACCTTGAGCCTTCCTTAACC 360
||||||||||||||||||||||||| ||||||| ||||||| |||||||||||| |||||
Sbjct 298 AATTTTAGCTCTTCTTCTTCCTCTTCAACAACAACAGCTCATCTTGAGCCTTCCCTAACC 357
Query 361 AACCAGAGATCCAAAACAACTACTTTTCCTTCTGCCCGGTTTGATCTTTTGGACAGTACT 420
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 358 AACCAGAGATCCAAAACCACTCCTTTTCCTTCTGCCCGGTTTGATCTTTTGGACAGTACT 417
Query 421 ACTAGCTATGGAGGTTTGATGGTGGACAGAGAGAAGAACAAGAGCAATGTATGTAGCAGA 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 418 ACTAGCTATGGAGGTTTGATGATGGACAGAGAGAAGAACAAGAGCAATGTATGTAGCAGA 477
Query 481 GAGATCAAGAAGAGTGCCATCGATGCATGTCATTCAGTAAGATGTGAGATAAGCCGTGGG 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GAGATCAAGAAAAGTGCCATCGATGCATGTCATTCAGTAAGATGTGAGATAAGCCGTGGG 537
Query 541 GATCTGATGAATAAGAAAGATGATCAAGTCATGGGGTTGGAGCTTGGGATGAGTTTGAAG 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 538 GATCTGATGAATAAGAAAGATGATCAAGTCATGGGGTTGGAGCTTGGGATGAGTTTGAGG 597
Query 601 AATCCCAAACAAGTTCTTGATTTGGAGCTTCGACTAGGCTACCTCTAA 648
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 598 AATCCCAACCAAGTTCTTGATTTGGAGCTTCGACTAGGCTACCTCTAA 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31295873581
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5