BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887299
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51171.1 | Symbols: | F-box and associated interaction doma... 464 7e-130
AT3G16555.1 | Symbols: | F-box family protein | chr3:5633426-5... 459 3e-128
> AT3G51171.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:19010805-19012008 FORWARD LENGTH=1204
Length=1204
Score = 464 bits (251), Expect = 7e-130
Identities = 466/564 (83%), Gaps = 37/564 (7%)
Strand=Plus/Plus
Query 479 AGAGAGTTGCGATCTACGAGTGTGCCTCTCACGCGTTCAAGTCTATTG-ATTCATCTAAC 537
||||||||||||||||||| |||||||||||||||||||||| ||||| | | ||| |||
Sbjct 563 AGAGAGTTGCGATCTACGACTGTGCCTCTCACGCGTTCAAGTTTATTGAAAT-ATCGAAC 621
Query 538 GAGCAAT-GCCCCTTAAGCC-AAGTTAAACGATTCAGTGTGTCCTTGAACGGAAATCTCT 595
|| | | | || ||| || | |||| ||||||||||||||| ||||||||||||||||
Sbjct 622 AAGGACTGGTTCC-TAA-CCGATGTTACACGATTCAGTGTGTCTTTGAACGGAAATCTCT 679
Query 596 ATTGGCGTACTCGTATTCCCCACACTTTA-GACTTT-TACATCCGAA-GCTTTGATTTCT 652
|||||| | ||| ||||||| |||| | | |||||| | ||||| || | ||||||||||
Sbjct 680 ATTGGCTTTCTCCTATTCCCAACAC-TGATGACTTTCT-CATCC-AATGTTTTGATTTCT 736
Query 653 CGAGGGATATATTCAAACACTTTTGTCTCCTTCCGTGCCGCG-AGAATCAT--TTTCGCG 709
| ||||| |||| ||||| ||||||||| ||||| || || | || | || ||| ||
Sbjct 737 CTAGGGAGATATGCAAACCCTTTTGTCTTCTTCCTTGTCG-GAAGTTTGATGCTTT--CG 793
Query 710 ATGTACTTGTTCTCGGAGTTTACAAGGGAGATAGGTTGTCCTTGTTAAAGCAATGTTATG 769
|| |||||| | ||||| || |||||||||||| |||||||||||||||||||||
Sbjct 794 ATTTACTTG---T--AAGTTTTCAGGGGAGATAGGTTATCCTTGTTAAAGCAATGTTATA 848
Query 770 TGACAAGG-AGCGTTGAGATTTGGGTTACGAAGAAGAAGATTG--A-TAGTAACAACAAT 825
||||||| || ||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 849 AGACAAGGAAG-GTTGAGATTTGGGTTACGAAGAATAAGATTGATACTAGTAACAACAAT 907
Query 826 GGAACAGACGAAGTTGTGTGGATTAAGTTGTTGACTTTGCCAACAAATAACTTGCCAAAC 885
||| |||||||||||||||||||| | |||||||| |||| | |||||||||||||||||
Sbjct 908 GGATCAGACGAAGTTGTGTGGATTCACTTGTTGACGTTGCTACCAAATAACTTGCCAAAC 967
Query 886 TTATATAAT-AAGTGTTATGGCATTAGTTACTTCATCTATGACAAGACCACCCTAATCAT 944
|||| | || ||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 968 TTAT-TTATCGAGTGTTATGGCATTAGTTACTTCATCTATGACAAGACCACCTTCATCAT 1026
Query 945 GTGTTGTGGTGAAGATGATGG-TGGAACGCGGGCTTTCATCTACATATTGTCAGGAGAGA 1003
| ||||| ||| || || | | |||| ||| |||||| |||||||||| ||||
Sbjct 1027 TTATTGTGCTGACGA-GAACACTT-AT-GCGG-CTTGCATCTA--TATTGTCAGGGGAGA 1080
Query 1004 TTTGTTCAAGAAGATTCCAATTGA 1027
|||| |||||||| || ||||||
Sbjct 1081 TTTGCTCAAGAAGTTTGTAATTGA 1104
> AT3G16555.1 | Symbols: | F-box family protein | chr3:5633426-5634542
FORWARD LENGTH=1050
Length=1050
Score = 459 bits (248), Expect = 3e-128
Identities = 461/560 (82%), Gaps = 30/560 (5%)
Strand=Plus/Plus
Query 479 AGAGAGTTGCGATCTACGAGTGTGCCTCTCACGCGTTCAAGTCTATTGATTCATCTAACG 538
||||||||||||||||||||||||||||||| |||||||||| ||||||| | ||||||
Sbjct 449 AGAGAGTTGCGATCTACGAGTGTGCCTCTCATGCGTTCAAGTTTATTGATACTTCTAACA 508
Query 539 AGCAATGCCCCTTAAGCCAAGTTAAACGATTCAGTGTGTCCTTGAACGGAAATCTCTATT 598
|| || | ||||| | ||| |||||| |||||||| ||||||||||||||||||||
Sbjct 509 AGGTCTGGTTCATAAGCGATGTTCAACGATACAGTGTGTGCTTGAACGGAAATCTCTATT 568
Query 599 GGCGTACTCGTATTCCCCACACTTTAGACTTTTACATCCGAAGCTTTGATTTCTCGAGGG 658
||| | || | || | | |||||| ||||| | ||||||||||||||||||
Sbjct 569 GGC-T-TTC-T-TT----TGA---T-GACTTTCGCATCCTATGCTTTGATTTCTCGAGGG 616
Query 659 ATATATTCAAACACTTTTGTCTCCTTCCGTGCCGCG-AGAATCAT-TTTCGCGATGTACT 716
| ||| |||||| |||||||||||||||||| || | || | || | ||||| ||||
Sbjct 617 AGATAGTCAAACCCTTTTGTCTCCTTCCGTGTCG-GAAGTTTGATAAAT-GCGATTTACT 674
Query 717 TGTTCTCGGAGTTTACAAGGGAGATAGGTTGTCCTTGTTAAAGCAATGTTATGTGACAAG 776
|| ||| ||||| ||||||||||||||| ||||||||||| ||||||| | ||||||
Sbjct 675 TGCCCTCCAAGTTTTCAAGGGAGATAGGTTATCCTTGTTAAATCAATGTTGTAAGACAAG 734
Query 777 GAGCG-TTGAGATTTGGGTTACGAAGAAGAAGATTGA---TAGTAACAACAATGGAACAG 832
|| || ||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 735 GA-CGATTGAGATTTGGGTTACGAAGAAGAAGATTGATTCTAGTAACAACAATGGATCAG 793
Query 833 ACGAAGTTGTGTGGATTAAG-TTGTTGACTTTGCCAACAAATAACTTGCCAAACTTATAT 891
||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||| |
Sbjct 794 ACGAAGTTGTGTGGATT-AGCTTGTTGACTTTGCCACCAAATAACTTGCCAAACTTATTT 852
Query 892 AATAAGTGTTATGGCATTAGTTACTTCATCTATGACAAGACCACCCTAATCATGTGTTGT 951
| | |||||||||||||||||||||||||||||||||||||||| ||||||| | ||||
Sbjct 853 ATTGTGTGTTATGGCATTAGTTACTTCATCTATGACAAGACCACCTTAATCATTTATTGT 912
Query 952 GGTGAAGATGATGG-TGGAACGCGGGCTTTCATCTACATATTGTCAGGAGAGATTTGTTC 1010
| || || || | | |||| ||| |||||| ||| ||||| | |||||||||
Sbjct 913 GAAGACGA-GAACACTTCA--GCGG-CTTGCATCTA--TATCATCAGGGGGGATTTGTTC 966
Query 1011 AAGAAGATTCCAATTGATTC 1030
|||||| || |||||||||
Sbjct 967 AAGAAGTTTGAAATTGATTC 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51188595793
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5