BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887303

Length=207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G78960.1 | Symbols: ATLUP2, LUP2 | lupeol synthase 2 | chr1:...   316    4e-86
  AT1G78970.2 | Symbols: LUP1, ATLUP1 | lupeol synthase 1 | chr1:...   224    2e-58


> AT1G78960.1 | Symbols: ATLUP2, LUP2 | lupeol synthase 2 | chr1:29696470-29701263 
FORWARD LENGTH=2578
Length=2578

 Score =  316 bits (171),  Expect = 4e-86
 Identities = 196/208 (94%), Gaps = 2/208 (1%)
 Strand=Plus/Plus

Query  1     GCCGAGAGAGATCCTACACCTCTTCATCGTGCTGCGAAACTTATCATCACTTCGCAACTT  60
             |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  2133  GCCGAGAGAGATCCTACACCTCTTCACCGTGCTGCGAAACTTATCATCACTTCACAACTT  2192

Query  61    GAAAATGGGGACTTTCCGCAACAGGAAATATTAGGAGTATTCATGAATACATGCATGCTA  120
             |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  2193  GAAAATGGGGACTTTCCGCAACAGGAAATATTAGGAGTGTTCATGAATACATGCATGCTA  2252

Query  121   CACTATGCTACATACAGAAACACCTTCCC-CTTATGGGCACTCGCTGAATATCGAAAAGC  179
             ||||||||||| |||||||||| |||||| || |||||||||||| |||||||| |||||
Sbjct  2253  CACTATGCTACGTACAGAAACATCTTCCCACT-ATGGGCACTCGCGGAATATCGGAAAGC  2311

Query  180   TGCCTTCTTAACTCATCAAGATCTATAG  207
             |||||||  ||||||||||||||| |||
Sbjct  2312  TGCCTTCGCAACTCATCAAGATCTTTAG  2339


> AT1G78970.2 | Symbols: LUP1, ATLUP1 | lupeol synthase 1 | chr1:29703340-29707844 
FORWARD LENGTH=2477
Length=2477

 Score =  224 bits (121),  Expect = 2e-58
 Identities = 147/160 (92%), Gaps = 0/160 (0%)
 Strand=Plus/Plus

Query  19    CCTCTTCATCGTGCTGCGAAACTTATCATCACTTCGCAACTTGAAAATGGGGACTTTCCG  78
             ||||||||||||||||| ||||||||||||| ||| ||||||||||| || || ||||| 
Sbjct  2169  CCTCTTCATCGTGCTGCCAAACTTATCATCAATTCACAACTTGAAAACGGCGATTTTCCT  2228

Query  79    CAACAGGAAATATTAGGAGTATTCATGAATACATGCATGCTACACTATGCTACATACAGA  138
             |||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct  2229  CAACAGGAAATAGTAGGAGCGTTCATGAATACATGCATGCTACACTATGCTACATACAGA  2288

Query  139   AACACCTTCCCCTTATGGGCACTCGCTGAATATCGAAAAG  178
             ||||||||||| |||||||||||||| ||||| |||||||
Sbjct  2289  AACACCTTCCCATTATGGGCACTCGCAGAATACCGAAAAG  2328



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9255448584


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5