BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887306
Length=291
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51960.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Complex 1... 279 7e-75
> AT5G51960.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Complex
1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45
proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr5:21110340-21111348 FORWARD LENGTH=628
Length=628
Score = 279 bits (151), Expect = 7e-75
Identities = 184/200 (92%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 1 ATGAGTGGTGAAGTTGTTATAGCTGCTAGAGTTTATCGTGAGCTTCTTAAAGCAGTGGTG 60
|||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||
Sbjct 85 ATGAGTGGTGAAGTTGTTTTAGCTGCTAGAGTTTATCGTGACCTTCTCAAAGCAGTGGTG 144
Query 61 AAACATGTTGGTAAAGAAGATTACAAGTCTCATTTCATT-GACTTTGTGAAGCAAGAATT 119
||||||||||||||||||||| |||||||||||||| || |||||||| |||||||||||
Sbjct 145 AAACATGTTGGTAAAGAAGATCACAAGTCTCATTTC-TTAGACTTTGTTAAGCAAGAATT 203
Query 120 CCGGAAGAATGCAAACTCGGAGACTATCAACCTTGCCCGCAATTACACTTATCTTCTCAA 179
|| |||||||||||||| |||| || |||||||| || |||||||| |||||||||||
Sbjct 204 TCGAAAGAATGCAAACTCAGAGAAAATAAACCTTGCTCGAAATTACACATATCTTCTCAA 263
Query 180 TAGCATTCACTCTCACAAGG 199
||||||||||||||||||||
Sbjct 264 TAGCATTCACTCTCACAAGG 283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13421488983
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5