BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887307
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 994 0.0
> AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:17334121-17335234 FORWARD
LENGTH=812
Length=812
Score = 994 bits (538), Expect = 0.0
Identities = 631/676 (93%), Gaps = 5/676 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAATGAAGCTTTTGTAGATGGTGAATTGGAGTCTCTTTTGGGGATGTTCAATTTT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 141 ATGGAGAATGAAGCTTTTGTAGATGGTGAATTGGAGTCTCTTTTGGGGATGTTCAACTTT 200
Query 61 GATCAATGTTCTTCTAACGAATCGAGCTTTTGCAATGCTCCTAATGAGTTTGATGTTGTC 120
||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| |
Sbjct 201 GATCAATGTTCATCTAACGAATCGAGCTTTTGCAATGCTCCAAATGAGACTGATGTT-T- 258
Query 121 TCTTCTTCTGATGATTTCTTCCCATTTAGTAAAATTCTGCAAGGGAACTATGCGGCCGTT 180
|| |||||||||||||||||||||||| ||| |||||||||| | |||||||||||||||
Sbjct 259 TC-TCTTCTGATGATTTCTTCCCATTTGGTACAATTCTGCAAAGTAACTATGCGGCCGTT 317
Query 181 CTTGACGGTTCCAATCACCAAACGAATCTTTATGAT-GACTCAAGACAAGAGCTGGTGAA 239
||||| |||||||| ||||||||||| | ||| | |||||||||||||| ||| ||||
Sbjct 318 CTTGATGGTTCCAACCACCAAACGAACCGAAATG-TCGACTCAAGACAAGATCTGTTGAA 376
Query 240 ACCAAGGAAGAAGCAAAAGATAAGTTCAGAAAGCAATTTGGTCACCGAGCCTAAGACTGC 299
||||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||
Sbjct 377 ACCAAGGAAGAAGCAAAAGTTAAGCTCGGAAAGCAATTTGGTTACCGAGCCTAAGACTGC 436
Query 300 TTGGAGAGATGGTCAGAGCCTAAGCAATTATAATAGTTCAGATGATGAGAATGCTTTAGG 359
||||||||||||||| |||||||||| ||||||||||||||||||||| || ||||||||
Sbjct 437 TTGGAGAGATGGTCAAAGCCTAAGCAGTTATAATAGTTCAGATGATGAAAAGGCTTTAGG 496
Query 360 TTTAGTGTCTAATACATCAAAAAGCCTAAAACGCAAAGCAAAATCCAACAAAGGGATAGC 419
||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||
Sbjct 497 TTTAGTGTCTAATACATCAAAAAGCCTAAAACGCAAAGCGAAAGCCAACAGAGGGATAGC 556
Query 420 TTCCGATCCTCAAAGCCTATATGCTCGGAAACGAAGAGAAAGGATAAACGATAGGCTAAA 479
|||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 557 TTCCGATCCTCAGAGCCTATACGCTAGGAAACGAAGAGAAAGGATAAACGATAGGCTAAA 616
Query 480 GACATTGCAGAGCCTAGTTCCTAATGGGACAAAGGTCGATATAAGCACAATGCTGGAAGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 GACATTGCAGAGCCTAGTTCCTAATGGGACAAAGGTCGATATAAGCACAATGCTGGAAGA 676
Query 540 TGCCGTCCATTACGTGAAGTTCTTGCAGCTGCAAATCAAGCTCTTGAGTTCAGATGATCT 599
||| |||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||
Sbjct 677 TGCTGTCCATTACGTGAAGTTCCTGCAGCTTCAAATCAAGCTCTTGAGTTCAGAAGATCT 736
Query 600 ATGGATGTATGCACTTCTTGCTCACAATGGCCTTAATATGGGACTACATCACAATATTTT 659
|||||||||||||| ||||||||||||||| || ||||||||||||||||||||| ||||
Sbjct 737 ATGGATGTATGCACCTCTTGCTCACAATGGTCTGAATATGGGACTACATCACAATCTTTT 796
Query 660 GTCTCGGCTTATGTAA 675
|||||||||||| |||
Sbjct 797 GTCTCGGCTTATTTAA 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32652195550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5