BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg887307 Length=675 Score E Sequences producing significant alignments: (Bits) Value AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 994 0.0 > AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:17334121-17335234 FORWARD LENGTH=812 Length=812 Score = 994 bits (538), Expect = 0.0 Identities = 631/676 (93%), Gaps = 5/676 (1%) Strand=Plus/Plus Query 1 ATGGAGAATGAAGCTTTTGTAGATGGTGAATTGGAGTCTCTTTTGGGGATGTTCAATTTT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 141 ATGGAGAATGAAGCTTTTGTAGATGGTGAATTGGAGTCTCTTTTGGGGATGTTCAACTTT 200 Query 61 GATCAATGTTCTTCTAACGAATCGAGCTTTTGCAATGCTCCTAATGAGTTTGATGTTGTC 120 ||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| | Sbjct 201 GATCAATGTTCATCTAACGAATCGAGCTTTTGCAATGCTCCAAATGAGACTGATGTT-T- 258 Query 121 TCTTCTTCTGATGATTTCTTCCCATTTAGTAAAATTCTGCAAGGGAACTATGCGGCCGTT 180 || |||||||||||||||||||||||| ||| |||||||||| | ||||||||||||||| Sbjct 259 TC-TCTTCTGATGATTTCTTCCCATTTGGTACAATTCTGCAAAGTAACTATGCGGCCGTT 317 Query 181 CTTGACGGTTCCAATCACCAAACGAATCTTTATGAT-GACTCAAGACAAGAGCTGGTGAA 239 ||||| |||||||| ||||||||||| | ||| | |||||||||||||| ||| |||| Sbjct 318 CTTGATGGTTCCAACCACCAAACGAACCGAAATG-TCGACTCAAGACAAGATCTGTTGAA 376 Query 240 ACCAAGGAAGAAGCAAAAGATAAGTTCAGAAAGCAATTTGGTCACCGAGCCTAAGACTGC 299 ||||||||||||||||||| |||| || |||||||||||||| ||||||||||||||||| Sbjct 377 ACCAAGGAAGAAGCAAAAGTTAAGCTCGGAAAGCAATTTGGTTACCGAGCCTAAGACTGC 436 Query 300 TTGGAGAGATGGTCAGAGCCTAAGCAATTATAATAGTTCAGATGATGAGAATGCTTTAGG 359 ||||||||||||||| |||||||||| ||||||||||||||||||||| || |||||||| Sbjct 437 TTGGAGAGATGGTCAAAGCCTAAGCAGTTATAATAGTTCAGATGATGAAAAGGCTTTAGG 496 Query 360 TTTAGTGTCTAATACATCAAAAAGCCTAAAACGCAAAGCAAAATCCAACAAAGGGATAGC 419 ||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||| Sbjct 497 TTTAGTGTCTAATACATCAAAAAGCCTAAAACGCAAAGCGAAAGCCAACAGAGGGATAGC 556 Query 420 TTCCGATCCTCAAAGCCTATATGCTCGGAAACGAAGAGAAAGGATAAACGATAGGCTAAA 479 |||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 557 TTCCGATCCTCAGAGCCTATACGCTAGGAAACGAAGAGAAAGGATAAACGATAGGCTAAA 616 Query 480 GACATTGCAGAGCCTAGTTCCTAATGGGACAAAGGTCGATATAAGCACAATGCTGGAAGA 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 617 GACATTGCAGAGCCTAGTTCCTAATGGGACAAAGGTCGATATAAGCACAATGCTGGAAGA 676 Query 540 TGCCGTCCATTACGTGAAGTTCTTGCAGCTGCAAATCAAGCTCTTGAGTTCAGATGATCT 599 ||| |||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| Sbjct 677 TGCTGTCCATTACGTGAAGTTCCTGCAGCTTCAAATCAAGCTCTTGAGTTCAGAAGATCT 736 Query 600 ATGGATGTATGCACTTCTTGCTCACAATGGCCTTAATATGGGACTACATCACAATATTTT 659 |||||||||||||| ||||||||||||||| || ||||||||||||||||||||| |||| Sbjct 737 ATGGATGTATGCACCTCTTGCTCACAATGGTCTGAATATGGGACTACATCACAATCTTTT 796 Query 660 GTCTCGGCTTATGTAA 675 |||||||||||| ||| Sbjct 797 GTCTCGGCTTATTTAA 812 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32652195550 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5