BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887311
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16030.1 | Symbols: CES101 | lectin protein kinase family pr... 1005 0.0
AT1G67520.1 | Symbols: | lectin protein kinase family protein ... 507 8e-143
> AT3G16030.1 | Symbols: CES101 | lectin protein kinase family
protein | chr3:5439609-5442802 FORWARD LENGTH=2553
Length=2553
Score = 1005 bits (544), Expect = 0.0
Identities = 658/713 (92%), Gaps = 7/713 (1%)
Strand=Plus/Plus
Query 1 CCCTTGAGGAAAAACATTTTGGATTGGACA-CTGCGGTTCAGGATCATGGAAGGGATAAT 59
||||||||||||| || ||||||||| | |||||||| ||||||||||||||||||||
Sbjct 1843 CCCTTGAGGAAAATTGTTCTGGATTGGA-AGCTGCGGTTTAGGATCATGGAAGGGATAAT 1901
Query 60 TCAAGGGCTTTTGTACCTTCACAAGTACTCGAGATTGAAAGTGATACACAGAGACATCAA 119
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1902 TCAAGGGCTTTTGTACCTTCATAAGTACTCGAGATTGAAAGTAATACACAGAGACATCAA 1961
Query 120 AGCCAGCAACATTTTACTGGACGAGGATATGAATCCCAAAATATCCGATTTTGGAATGGC 179
|||| |||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1962 AGCCGGCAACATTTTGCTGGACGAGGATATGAACCCCAAAATATCTGATTTTGGAATGGC 2021
Query 180 TCGGATATTTGGAGCGCAAGAATCCAGAGCTAACACCAAAAGAGTTGCTGGCACA---GG 236
||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||| ||
Sbjct 2022 TCGGATATTTGGAGCCCAAGAATCCAAAGCCAACACGAAAAGAGTTGCTGGCACATTTGG 2081
Query 237 ATATATGTCTCCGGAGTACTTCAGAGAAGGACTGTTCTCGGCGAAATCAGATGTATTTAG 296
||||||||||| |||||||||||||| ||| | |||||||||||||||||||| || ||
Sbjct 2082 CTATATGTCTCCAGAGTACTTCAGAGAGGGATTATTCTCGGCGAAATCAGATGTGTTCAG 2141
Query 297 CTTCGGAGTTCTAATGTTGGAAATCATTTGTGGAAGGAAGAACAATAGCTTCCACCATGA 356
|||||| ||||||||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct 2142 CTTCGGGGTTCTAATGCTCGAAATCATTTGTGGAAGGAAAAACAATAGCTTCCACCATGA 2201
Query 357 CTCAGAAGGACCTCTGAATCTCATAGTTCATGTGTGGAGTCTGTTCAAAGATAACCGCGT 416
||||||||||||||||||||||||||| |||||||||| |||||| ||||| ||||| ||
Sbjct 2202 CTCAGAAGGACCTCTGAATCTCATAGTCCATGTGTGGAATCTGTTTAAAGAGAACCGAGT 2261
Query 417 TCACGAGGTTG-TAGATCCATCTTTGGGAGATTCTGCAGTTGAGAACCCTCAAGTGTTGA 475
|| |||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2262 TCGCGAGGT-GATTGATCCATCTTTGGGAGATTCTGCAGTTGAGAACCCTCAAGTGTTGA 2320
Query 476 GATGCGTTCAAGTTGCTCTGTTGTGTGTACAACAAAACGCAGAAGATAGACCAAGTATGT 535
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2321 GATGCGTTCAAGTTGCTCTGTTGTGTGTACAACAAAACGCAGACGATAGACCAAGTATGT 2380
Query 536 TAGATGTTGTGTCGATGATATACGGCGACGGCAACAACGCTTTTTCTTTGCCTAACGAGC 595
|||| |||||||| ||||||||||| || || ||||||||| ||||||||||||| ||||
Sbjct 2381 TAGACGTTGTGTCCATGATATACGGTGATGGAAACAACGCTCTTTCTTTGCCTAAAGAGC 2440
Query 596 CAGCTTTCTATGATGGTCCTCGGAGAAGCTCGCCGGAGATTGATGTTGAGCCACCTGAGC 655
||||||||||||||||||| | |||||||||||||||||| || ||||||||||| |||
Sbjct 2441 CAGCTTTCTATGATGGTCCCCCGAGAAGCTCGCCGGAGATGGAAGTTGAGCCACCGGAGA 2500
Query 656 TGGAAAATGTATCGGCAAATAGAGTTACCATCACAGTGATGGAAGCAAGATGA 708
|||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2501 TGGAAAATGTATCGGCAAATAGAGTTACAATCACAGTGATGGAAGCAAGATGA 2553
> AT1G67520.1 | Symbols: | lectin protein kinase family protein
| chr1:25302726-25305857 REVERSE LENGTH=2387
Length=2387
Score = 507 bits (274), Expect = 8e-143
Identities = 409/474 (86%), Gaps = 9/474 (2%)
Strand=Plus/Plus
Query 238 TATATGTCTCCGGAGTACTTCAGAGAAGGACTGTTCTCGGCGAAATCAGATGTATTTAGC 297
|||||||| |||||||| || ||||||||||| |||||||||||||||||||| || |||
Sbjct 1834 TATATGTCGCCGGAGTATTTTAGAGAAGGACTATTCTCGGCGAAATCAGATGTGTTCAGC 1893
Query 298 TTCGGAGTTCTAATGTTGGAAATCATTTGTGGAAGGAAGAACAATAGCTTCCACCATGAC 357
|| || ||||||||| | |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1894 TTTGGGGTTCTAATGCTCGAAATCATTTGTGGGAGGAAGAACAATAGCTTTCACCATGAC 1953
Query 358 TCAGAAGGACCTCTGAATCTCATAGTTCATGTGTGGAGTCTGTTCAAAGATAACCGCGTT 417
| |||||||||| |||||||||||||||||||||||| |||||| ||||| ||| ||
Sbjct 1954 TTAGAAGGACCTTTGAATCTCATAGTTCATGTGTGGAATCTGTTTAAAGAGAACAAAATT 2013
Query 418 CACGAGGTTG-TAGATCCATCTTTGGGAGATTCTGCAG-TTGAGAACCCTCAAGTGTTGA 475
| |||| || |||||| |||||| |||||||||| | |||| |||||||||||||||
Sbjct 2014 CGTGAGG-TGATAGATCTGTCTTTGAGAGATTCTGC-GCTTGATTACCCTCAAGTGTTGA 2071
Query 476 GATGCGTTCAAGTTGCTCTGTTGTGTGTACAACAAAACGCAGAAGATAGACCAAGTATGT 535
||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||
Sbjct 2072 GATGCGTTCAAGTTGCTCTATTGTGTGTACAAGAAAACGCGGAAGATAGACCAAGTATGT 2131
Query 536 TAGATGTTGTGTCGATGATATACGGCGACGGCAACAACGCTTTTTCTTTGCCTAACGAGC 595
|||| |||||||| |||||||| ||||| || || || ||| ||||||||||||| ||||
Sbjct 2132 TAGACGTTGTGTCCATGATATATGGCGAAGGAAATAATGCTCTTTCTTTGCCTAAAGAGC 2191
Query 596 CAGCTTTCTATGATGGTCCTCGGAGAAGCTCGCCGGAGATTGATG-TTGAGCCACCTGAG 654
| ||||||||||||||||| |||||||||| || || || || | ||||||||| |||
Sbjct 2192 CTGCTTTCTATGATGGTCCCCGGAGAAGCTTTCCAGAAAT-GAAGGTTGAGCCACAGGAG 2250
Query 655 CTGGAAAATGTATCGGCAAATAGAGTTACCATCACAGTGATGGAAGCAAGATGA 708
| ||||||||||||||| | || |||||||||| ||| |||| ||||| |||
Sbjct 2251 CCGGAAAATGTATCGGCGAGTA---TTACCATCACGGTGCTGGAGGCAAGGTGA 2301
Score = 327 bits (177), Expect = 6e-89
Identities = 215/234 (92%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 1 CCCTTGAGGAAAAACATTTTGGATTGGACACTGCGGTTCAGGATCATGGAAGGGATAATT 60
||||||||||||||| ||||||||||||| |||||||||||||||||||||| || |||
Sbjct 1525 CCCTTGAGGAAAAACGTTTTGGATTGGACGTTGCGGTTCAGGATCATGGAAGGAATCATT 1584
Query 61 CAAGGGCTTTTGTACCTTCACAAGTACTCGAGATTGAAAGTGATACACAGAGACATCAAA 120
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1585 CAAGGGCTTTTGTACCTTCACAAGTACTCAAGATTGAAAGTGATACATAGAGACATCAAA 1644
Query 121 GCCAGCAACATTTTACTGGACGAGGATATGAATCCCAAAATATCCGATTTTGGAATGGCT 180
|| || || ||||| || ||||||||||||||||| |||||||| ||||||||| |||||
Sbjct 1645 GCTAGTAATATTTTGCTAGACGAGGATATGAATCCGAAAATATCGGATTTTGGATTGGCT 1704
Query 181 CGGATATTTGGAGCGCAAGAATCCAGAGCTAACACCAAAAGAGTTGCTGGCACA 234
||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||
Sbjct 1705 CGGATATTTGGAGCGGAAGAAACAAGAGCCAACACCAAAAGAGTTGCTGGCACA 1758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34309922401
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5