BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887315
Length=642
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34260.1 | Symbols: | transducin family protein / WD-40 rep... 1037 0.0
> AT2G34260.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr2:14465849-14468531 FORWARD LENGTH=1227
Length=1227
Score = 1037 bits (561), Expect = 0.0
Identities = 616/643 (96%), Gaps = 2/643 (0%)
Strand=Plus/Plus
Query 1 ATGACCTTTGCGTCTGATTCAATGAAGCTAGTGGCAACAAGTGGAGACGGTACCCTGTCT 60
||||||||||| |||||||||||||||||||||| ||||||||||||||| || |||||
Sbjct 471 ATGACCTTTGCATCTGATTCAATGAAGCTAGTGGTAACAAGTGGAGACGGGACTTTGTCT 530
Query 61 GTCTGTAATCTTAGAACGAGTAAGGTCCAATCTCAGTCTGAATTTTCTGAAGACGAACTA 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 531 GTCTGTAATCTTAGAACGAGTAAGGTCCAATCTCAGTCCGAATTTTCTGAAGATGAACTA 590
Query 121 CTTTCTGTTGTTATAATGAAGAATGGCCGTAAAGTTATTTGTGGAACTCAGAATGGTACT 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 591 CTTTCTGTTGTTATAATGAAGAATGGCCGTAAAGTTATCTGTGGAACTCAGAATGGTACT 650
Query 181 CTCTTGTTGTATTCATGGGGATTTTTCAAGGATTGCAGCGATCGGTTTGTTGATCTAGCT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 651 CTCTTGTTGTATTCATGGGGATTTTTCAAGGATTGCAGCGATCGGTTTGTTGATCTCGCT 710
Query 241 CCAAATTCAGTTGATACTCTATTGAAGCTCGATGAGGACAGACTTATCACTGGGTGTGAT 300
|||||||| |||||| ||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 711 CCAAATTCCGTTGATGCTCTACTGAAGCTCGATGAGGACAGACTTATCACTGGATGTGAT 770
Query 301 AATGGAATACTTAGCCTTGTTGGAATACTGCCCAACAGAATCATACAGCCGATTGGGTCA 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 AATGGAATAATTAGCCTTGTTGGAATACTGCCCAACAGAATCATACAGCCGATTGGGTCA 830
Query 361 CACGACTACCCTATCGAAGATCTCGCTCTCTCGCATGATAACAAATTTCTCGGTAGCACA 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 831 CACGACTACCCTATCGAAGATCTCGCTCTCTCGCATGATAAGAAATTTCTCGGTAGCACA 890
Query 421 GCTCATGACAGTATGCTGAAGCTGTGGAACCTAGAAGAGATTCTAGAAGGTTCTAATGGC 480
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 891 GCTCATGACAGTATGCTGAAGTTGTGGAACCTAGAAGAGATTCTAGAAGGTTCTAATGTC 950
Query 481 AACTCGGGGAATGCATCTGGAGCTGCAGGAGACAGTGACAGTGACAAGGATGGGATGGAC 540
||||| |||||||||||||||||||||| |||||||||||| ||||| ||||||||||||
Sbjct 951 AACTCTGGGAATGCATCTGGAGCTGCAGAAGACAGTGACAGCGACAATGATGGGATGGAC 1010
Query 541 CTTGACAATGATTCT-CACAAGTCTTCCAAAGGCAGCAAGAGGAAAACAAAAAGTAAACC 599
|||||||||||| || | |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1011 CTTGACAATGATCCTTC-CAAGTCTTCCAAAGGCAGCAAGAGGAAAACAAAAAGTAAAGC 1069
Query 600 GAATACGCTCAACTCTACAAATAATTTCTTTGCAGACTTATAG 642
||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1070 GAATACGCTGAACGCTACAAATAATTTCTTTGCAGACTTATAG 1112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30994468699
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5