BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887320
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57200.1 | Symbols: | ENTH/ANTH/VHS superfamily protein | c... 1031 0.0
AT4G25940.1 | Symbols: | ENTH/ANTH/VHS superfamily protein | c... 579 2e-164
> AT5G57200.1 | Symbols: | ENTH/ANTH/VHS superfamily protein |
chr5:23177696-23180601 FORWARD LENGTH=1776
Length=1776
Score = 1031 bits (558), Expect = 0.0
Identities = 596/615 (97%), Gaps = 0/615 (0%)
Strand=Plus/Plus
Query 1 ATGGGAACGTTTACGAGCTTTCGAAAAGCCTATGGAGCACTCAAAGATACAACCACCGTT 60
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGGAACGTTCACGAGCTTTCGAAAAGCCTATGGAGCGCTCAAAGATACAACCACCGTT 60
Query 61 GGTCTCGCTAAGGTCAACAGCGAATTCAAGGATTTAGATATTGCGATCGTCAAAGCAACG 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GGTCTCGCTAAGGTCAACAGCGAATTCAAGGATTTAGATATTGCGATCGTCAAAGCGACG 120
Query 121 AATCATGTTGAATCTCCACCAAAAGAACGTCATGTTCGTAAAATATTCTCGGCGACATCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATCATGTTGAATCTCCACCAAAAGAACGTCATGTTCGTAAAATATTCTCGGCGACATCT 180
Query 181 GTGATACAACCAAGAGCAGATGTAGCTTATTGCATTCATGCATTATCTAAAAGATTATCG 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGATACAACCACGAGCAGATGTAGCTTATTGCATTCATGCATTATCTAAAAGATTATCG 240
Query 241 AAAACTCGCAATTGGGTTGTTGCAATGAAGGTGTTGATAGTAATTCACAGAACATTAAGA 300
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 241 AAAACTCGCAATTGGGTTGTTGCAATGAAAGTGTTAATAGTAATTCACAGAACATTAAGA 300
Query 301 GAAGGTGATCCAACATTCAGAGAAGAGCTTCTAAATTACTCACATAGAAGACATATACTC 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAAGGTGATCCAACATTTAGAGAAGAGCTTCTAAATTACTCACATAGAAGACATATACTC 360
Query 361 AGAATATCTAACTTCAAAGACGATACAAGTCCTCTTGCGTGGGATTGTTCTGCTTGGGTT 420
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 361 AGAATATCTAACTTCAAAGATGACACAAGTCCTCTTGCGTGGGATTGTTCTGCTTGGGTT 420
Query 421 AGAACATACGCGCTCTTTCTTGAAGAGCGGCTTGAATGTTATCGGGTTTTAAAGTATGAC 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGAACATACGCGCTCTTTCTAGAAGAGCGGCTTGAATGTTATCGGGTTTTAAAGTATGAC 480
Query 481 ATCGAGGCAGAGCGTTTACCAAAAGCTTCAGGTGCAGCTTCCAAGACGCATAGAACAAGG 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 ATCGAGGCAGAGCGTTTACCAAAAGCTTCAGGTGCAGCTTCAAAGACGCATAGAACAAGG 540
Query 541 ATGTTGTCTGGTGAAGATCTATTAGGACAATTACCCGCGTTACAACAGCTTCTTTACCGG 600
|||||||||||||||||| | |||| ||| ||||| || || ||||||||||||||||||
Sbjct 541 ATGTTGTCTGGTGAAGATTTGTTAGAACAGTTACCTGCATTGCAACAGCTTCTTTACCGG 600
Query 601 CTTCTCGGATGTCAG 615
||| |||||||||||
Sbjct 601 CTTATCGGATGTCAG 615
Score = 595 bits (322), Expect = 2e-169
Identities = 381/409 (93%), Gaps = 5/409 (1%)
Strand=Plus/Plus
Query 667 GGAGGATTCGACAATCTTCTACTAGACAGTCTCTACGAAGACGATACAGCAAGAAGACAG 726
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1369 GGAGGATTCGACAATCTTCTACTAGACAGTCTTTACGAAGACGATACAGCAAGAAGACAG 1428
Query 727 ATCCAATTAACAAACGCCGGTTACGGATTTGGAGCCACCGCTATACCCGGAGAACCAGCC 786
|| || |||||||||||||||||||||||||||||||| ||||||||||||| || || |
Sbjct 1429 ATTCAGTTAACAAACGCCGGTTACGGATTTGGAGCCACGGCTATACCCGGAGCACTAG-C 1487
Query 787 TT-ATCAAACCCAAACCCATTCGGGATGCAACAAGATCCTTTCGCAATGTCAAACAACAT 845
|| ||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1488 TTCATCGAACCCAAACCCGTTCGGGGTGCAACAAGATCCTTTCGCAATGTCAAACAACAT 1547
Query 846 GGCTCCACCAACCAACGTCCAAATGGCAATGCAACAACAACAAATGATGATGATGAATAA 905
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 GGCTCCACCAACCAATGTTCAAATGGCAATGCAACAACAACAAATGATGATGATGAATAA 1607
Query 906 TCGAAGTCCATATAACAACAACTATTCACCTTATCATCATCATCAGTTCTCACCAAATCC 965
| |||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1608 CCAAAGTCCATATAATAACAACTATTCACCATATCATCATCATCAATTCTCACCAAATCC 1667
Query 966 TTCAACTTC---ATCTCCTAATCCTTTTGGTGACCCTTTCCTTGCCCTCCCAGCTCCTCC 1022
||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1668 TTCAACTTCTTCATCTCCTAACCCTTTTGGTGACCCTTTCCTTGCTCTCCCAGCTCCTCC 1727
Query 1023 TTCATCTGCTACTCAGCAACAACACAGTCATAATCATATGCTTCTCTAG 1071
||||||| |||| ||||| ||| |||||| |||||||||||||||||||
Sbjct 1728 TTCATCTACTACACAGCAGCAATACAGTCCTAATCATATGCTTCTCTAG 1776
> AT4G25940.1 | Symbols: | ENTH/ANTH/VHS superfamily protein |
chr4:13169641-13172881 REVERSE LENGTH=2138
Length=2138
Score = 579 bits (313), Expect = 2e-164
Identities = 461/532 (87%), Gaps = 12/532 (2%)
Strand=Plus/Plus
Query 1 ATGGGAACGTTT-ACGAGCTTTCGAAAAGCCTAT-GGAGCACTCAAAGATACAACCACCG 58
|||| ||||||| || ||||| || |||| || | |||||| |||||||| | || ||||
Sbjct 182 ATGGCAACGTTTAAC-AGCTTCCGTAAAG-CTGTCGGAGCAATCAAAGATTCCACTACCG 239
Query 59 TTGGTCTCGCTAAGGTCAACAGCGAATTCAAGGATTTAGATATTGCGATCGTCAAA-GCA 117
| || |||| |||||||||||||||||||||||||| ||| |||||||||| ||| ||
Sbjct 240 TAAGTATCGCCAAGGTCAACAGCGAATTCAAGGATTTGGATGTTGCGATCGT-AAAGGCC 298
Query 118 ACGAATCATGTTGAATCTCCACCAAAAGAACGTCATGTTCGTAAAATATTCTCGGCGACA 177
|| ||||| || |||||| | || ||||||||||| |||||| ||||||||||||||||
Sbjct 299 ACAAATCACGTAGAATCTGCTCCCAAAGAACGTCACATTCGTAGAATATTCTCGGCGACA 358
Query 178 TCTGTGA-TACAACCAAGAGCAGATGTAGCTTATTGCATTCATGCATTATCTAAAAGATT 236
|| || | | |||||| |||||||||| ||||| |||||||| |||||| | ||||||||
Sbjct 359 TCGGT-AGTGCAACCACGAGCAGATGTTGCTTACTGCATTCACGCATTAGCCAAAAGATT 417
Query 237 ATCGAAAACTCGCAATTGGGTTGTTGCAATGAAGGTGTTGATAGTAATTCACAGAACATT 296
|| ||||||||||||||||||||||| || |||||||| ||||| ||||| |||||| |
Sbjct 418 GTCAAAAACTCGCAATTGGGTTGTTGCGATCAAGGTGTTAATAGTCATTCATAGAACACT 477
Query 297 AAGAGAAGGTGATCCAACATTCAGAGAAGAGCTTCTAAATTACTCACATAGAAGACATAT 356
||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||
Sbjct 478 AAGAGAAGGTGATCCAACATTTAGAGAAGAGCTTCTCAATTACTCACATAGAGGACATAT 537
Query 357 AC-TCAGAATATCTAACTTCAAAGACGATACAAGTCCTCTTGCGTGGGATTGTTCTGCTT 415
|| || ||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 538 ACTTC-GAATATCAAACTTCAAAGACGATACAAGTCCTCTTGCTTGGGATTGCTCTGCGT 596
Query 416 GGGTTAGAACATACGCGCTCTTTCTT-GAAGAGCGGCTTGAATGTTATCGGGTTTTAAAG 474
|| |||| ||||||||||| |||| | || |||||||||||||| ||||||||||| |||
Sbjct 597 GGATTAGGACATACGCGCT-TTTCCTCGAGGAGCGGCTTGAATGCTATCGGGTTTTGAAG 655
Query 475 TATGACATCGAGGCAGAGCGTTTACCAAAAGCTTCAGGTGCAGCTTCCAAGA 526
|||||||| || ||||| ||||||||||||| |||||||||| |||| ||||
Sbjct 656 TATGACATAGAAGCAGAACGTTTACCAAAAGGTTCAGGTGCATCTTCAAAGA 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52459569525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5