BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887324
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10740.1 | Symbols: ASD1, ARAF1, ARAF, ATASD1 | alpha-L-arab... 1136 0.0
> AT3G10740.1 | Symbols: ASD1, ARAF1, ARAF, ATASD1 | alpha-L-arabinofuranosidase
1 | chr3:3360888-3365414 REVERSE LENGTH=2478
Length=2478
Score = 1136 bits (615), Expect = 0.0
Identities = 693/730 (95%), Gaps = 8/730 (1%)
Strand=Plus/Plus
Query 1 ACTTCTGCTAGCAATTTGTTTTCTATGTATCATCAATTTGACCGCACTTCACGCAGTGGT 60
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||
Sbjct 1613 ACTTCTGCTAGCAATTTGTTTTCCATGTATCATCAATTTGATCGCACTTCACGCAAAGGT 1672
Query 61 CCAAAGGCTTTTGTCAGTGAATATGCTGTGACTGGAAAAGATGCTGGTACGGGAAGCCTT 120
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1673 CCAAAGGCTTTTGTCAGTGAATATGCTGTTACTGGAAAAGATGCTGGTACAGGAAGCCTT 1732
Query 121 CTCGCCTCTCTTGCAGAAGCTGCGTTTCTCATTGGTCTTGAAAAGAATAGTGACATTGTG 180
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 CTTGCCTCTCTTGCAGAAGCTGCGTTTCTCATTGGTCTTGAAAAGAATAGTGACATTGTT 1792
Query 181 GAAATGGCAAGTTATGCACCACTCTTTGTGAACACAAATGATAGACGGTGGAACCCTGAT 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1793 GAAATGGCAAGTTATGCTCCACTCTTTGTGAACACAAATGATAGACGGTGGAACCCTGAT 1852
Query 241 GCAATAGTCTTCAATTCCTCTCATCTATATGGAACTCCAAGCTATTGGGTGCAACGGTTC 300
|||||||||||||| |||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 1853 GCAATAGTCTTCAACTCCTCTCATCTATATGGAACACCTAGCTATTGGGTTCAACGGTTT 1912
Query 301 TTCGCAGAGTCAAGCGGAGCAACTCTTCTCACTTCAACACTCAAGGGAAACTCAACTTCT 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1913 TTTGCAGAGTCAAGCGGAGCAACTCTTCTCACTTCAACACTCAAGGGAAACTCTACTTCT 1972
Query 361 CTTGTCGCATCTGCAATCTCTTGGGAAAACAATGGCAAAGATTACATACGCATCAAGTTG 420
||||| |||||||| ||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1973 CTTGTTGCATCTGCTATCTCTTGGAAAAACAATGGCAAAGATTACATACGCAT-AA---- 2027
Query 421 CAGGCTGTAAACTTCGGAGCTAACTCAGTAAATATGAAAGTGTTGGTAACTGGATTAGAC 480
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||
Sbjct 2028 -AGGCTGTAAACTTCGGAGCTAACTCAGAAAATATGCAAGTGTTGGTAACTGGATTGGAC 2086
Query 481 CCGAACGTGATGAGAGTTACAGGATCAAAGAAGACAGTACTTACATCTACCAATGTGATG 540
|||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||
Sbjct 2087 CCGAACGTGATGAGAGTTTCGGGATCAAAGAAGACAGTACTTACCTCTACCAATGTGATG 2146
Query 541 GATGAAAATTCCTTCTCACAGCCAGAGAAGGTTGTGCCACATGAAAGCTTGCTAGAGATG 600
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 2147 GATGAAAATTCCTTCTCACAGCCAGAGAAGGTTGTACCACATGAAAGCTTGCTAGAGTTG 2206
Query 601 GCAGAGGAGGATATGACCGTTGTTCTCCCGCCACATTCCTTTTCTTCATTCGATTTGCTG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2207 GCAGAGGAGGATATGACCGTTGTTCTCCCGCCACATTCCTTTTCTTCATTCGATTTGTTG 2266
Query 661 AAGGAATCTGCAAAGATTAA-AATGCCAATTTCTGATTCTTCTTCCCATCAGAAAACTAC 719
||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||
Sbjct 2267 AAGGAATCTGCAAAGAT-AAGAATGCCAATCTCTGATTCTTCTTCCCATCAGAAAACTAC 2325
Query 720 CACTGTGTGA 729
||||||||||
Sbjct 2326 CACTGTGTGA 2335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5