BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887336

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G71910.1 | Symbols:  | unknown protein; Has 28 Blast hits to...   494    3e-139


> AT1G71910.1 | Symbols:  | unknown protein; Has 28 Blast hits 
to 28 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:27064932-27065947 FORWARD 
LENGTH=1016
Length=1016

 Score =  494 bits (267),  Expect = 3e-139
 Identities = 310/331 (94%), Gaps = 2/331 (1%)
 Strand=Plus/Plus

Query  1    ATGGCTCTGAACAGTGTCTCATCTGAAGAATTTAGCTTCCCATCGCTAGCTTCTCATGAT  60
            ||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct  292  ATGGCTCTGAATAGTGTCTCCTCTGAAGAATTTACCTTCCCATCGCTAGCTTCTCATGAT  351

Query  61   CCTTCTCACCATTCTGGTCTCGATTCACCTCCTTTGTGGAAACACTCGCCGGTTAAC-TC  119
             ||||||||||||| ||||| |||||||||||||||||||||||||| |||||| || ||
Sbjct  352  TCTTCTCACCATTCCGGTCTTGATTCACCTCCTTTGTGGAAACACTCACCGGTT-ACTTC  410

Query  120  CTTCCGCCGGAAAGATTACGACTTTGGTTTAGCGAGATTACTCATTGGAAAAGACGATGA  179
            ||| |||||||||||||||||||||||||| || |||||| ||||||||||||||| |||
Sbjct  411  CTTTCGCCGGAAAGATTACGACTTTGGTTTGGCAAGATTAGTCATTGGAAAAGACGGTGA  470

Query  180  TCATGATCAGAGGAAGAGCTTCTCGTACGTGGAGATGAGAAGTCGTTGGATGGACGACAA  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  471  TCATGATCAGAGGAAGAGCTTCTCGTACGTGGAGATGAGAAGTCGTTGGATCGACGACAA  530

Query  240  AGAAGAGGAGAAAATGGATATGTTATGGGAAGATCTCAACGAAGAATTGCCTCCAAGAAG  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  531  AGAAGAGGAGAAAATGGATATGTTATGGGAAGATCTCAACGAAGAATTGCCTCCAAGAAG  590

Query  300  CCAGAGTTTAAGGATTGAACCTGGCGGTGAC  330
             |||||||| || |||| || |||||| |||
Sbjct  591  TCAGAGTTTGAGAATTGTACATGGCGGCGAC  621



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15381931194


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5