BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg887336 Length=330 Score E Sequences producing significant alignments: (Bits) Value AT1G71910.1 | Symbols: | unknown protein; Has 28 Blast hits to... 494 3e-139 > AT1G71910.1 | Symbols: | unknown protein; Has 28 Blast hits to 28 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27064932-27065947 FORWARD LENGTH=1016 Length=1016 Score = 494 bits (267), Expect = 3e-139 Identities = 310/331 (94%), Gaps = 2/331 (1%) Strand=Plus/Plus Query 1 ATGGCTCTGAACAGTGTCTCATCTGAAGAATTTAGCTTCCCATCGCTAGCTTCTCATGAT 60 ||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 292 ATGGCTCTGAATAGTGTCTCCTCTGAAGAATTTACCTTCCCATCGCTAGCTTCTCATGAT 351 Query 61 CCTTCTCACCATTCTGGTCTCGATTCACCTCCTTTGTGGAAACACTCGCCGGTTAAC-TC 119 ||||||||||||| ||||| |||||||||||||||||||||||||| |||||| || || Sbjct 352 TCTTCTCACCATTCCGGTCTTGATTCACCTCCTTTGTGGAAACACTCACCGGTT-ACTTC 410 Query 120 CTTCCGCCGGAAAGATTACGACTTTGGTTTAGCGAGATTACTCATTGGAAAAGACGATGA 179 ||| |||||||||||||||||||||||||| || |||||| ||||||||||||||| ||| Sbjct 411 CTTTCGCCGGAAAGATTACGACTTTGGTTTGGCAAGATTAGTCATTGGAAAAGACGGTGA 470 Query 180 TCATGATCAGAGGAAGAGCTTCTCGTACGTGGAGATGAGAAGTCGTTGGATGGACGACAA 239 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 471 TCATGATCAGAGGAAGAGCTTCTCGTACGTGGAGATGAGAAGTCGTTGGATCGACGACAA 530 Query 240 AGAAGAGGAGAAAATGGATATGTTATGGGAAGATCTCAACGAAGAATTGCCTCCAAGAAG 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 531 AGAAGAGGAGAAAATGGATATGTTATGGGAAGATCTCAACGAAGAATTGCCTCCAAGAAG 590 Query 300 CCAGAGTTTAAGGATTGAACCTGGCGGTGAC 330 |||||||| || |||| || |||||| ||| Sbjct 591 TCAGAGTTTGAGAATTGTACATGGCGGCGAC 621 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15381931194 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5