BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887343
Length=585
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39200.1 | Symbols: MLO12, ATMLO12 | Seven transmembrane MLO... 937 0.0
> AT2G39200.1 | Symbols: MLO12, ATMLO12 | Seven transmembrane MLO
family protein | chr2:16356148-16359813 REVERSE LENGTH=1854
Length=1854
Score = 937 bits (507), Expect = 0.0
Identities = 569/597 (95%), Gaps = 12/597 (2%)
Strand=Plus/Plus
Query 1 ATGGCAATAAAAGAGCGATCGTTGGAGGAGACACCAACATGGGCTGTTGCTGTTGTTTGC 60
|||||||||||||||||||| | ||||| ||||||||||||||||||||||| ||||||
Sbjct 17 ATGGCAATAAAAGAGCGATCACTAGAGGAAACACCAACATGGGCTGTTGCTGTAGTTTGC 76
Query 61 TTCGTTCTCCTTTTCATTTCCATCATGATCGAATACTTCTTGCACTTTGTTGGTCACTGG 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 77 TTCGTTCTCCTTTTCATTTCCATCATGATCGAATACTTCTTGCACTTTATTGGTCACTGG 136
Query 121 TTTAAAAAGAAGCACAAGAAAGCTTTATCTGAAGCTCTTGAAAA-G-T----------TG 168
||||| |||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 137 TTTAAGAAGAAGCACAAGAAAGCTTTATCTGAAGCTCTTGAAAAGGTTAAAGCAGAACTG 196
Query 169 ATGCTTCTGGGATTCATATCGCTTCTATTGGTTGTATTGCAAACACCAGTCTCCCAGATT 228
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 197 ATGCTTCTGGGATTCATATCGCTTCTATTGGTTGTATTGCAAACACCAGTCTCCGAGATT 256
Query 229 TGCATTCCAAGAAATATTGCTGCGACTTGGCATCCTTGTAGCAACCATCAAGAAATTGCT 288
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 257 TGCATTCCAAGAAATATTGCTGCGACTTGGCATCCTTGTAGCAACCATCAAGAAATCGCC 316
Query 289 AAATACGGTAAAGATTATATCGACGATGGCCGCAAAATTCTTGAAGATATTGACTCCAAA 348
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 317 AAATATGGTAAAGATTATATCGACGATGGCCGCAAAATTCTTGAAGATTTTGACTCCAAC 376
Query 349 GACTTTTATAGTCCTCGCCGAAATTTAGCCACCAAGGGTTATGACAAATGTGCAGAAAAG 408
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 377 GACTTTTACAGTCCTCGCCGAAATTTAGCCACCAAGGGTTATGACAAATGCGCAGAAAAG 436
Query 409 GGGAAAGTAGCATTAGTATCTGCTTATGGTATCCACCAGCTGCATATATTCATCTTTGTG 468
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 437 GGGAAAGTAGCATTAGTATCTGCCTATGGTATCCACCAGCTGCATATATTCATCTTTGTG 496
Query 469 CTCGCTGTTTTTCATGTTCTCTACTGCATTATAACCTATGCTTTAGGAAAGACCAAGATG 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 CTCGCTGTTTTTCATGTTCTCTACTGCATTATAACCTATGCTTTAGGAAAGACCAAGATG 556
Query 529 AAGAAATGGAAGTCATGGGAGAGAGAGACCAAAACAATTGAGTACCAATATGCCAAT 585
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 AAGAAATGGAAGTCATGGGAGAGAGAGACCAAAACAATTGAGTACCAATATGCCAAT 613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28131122320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5