BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887345
Length=762
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47850.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 1116 0.0
> AT2G47850.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr2:19595673-19598581 FORWARD LENGTH=2149
Length=2149
Score = 1116 bits (604), Expect = 0.0
Identities = 705/748 (94%), Gaps = 30/748 (4%)
Strand=Plus/Plus
Query 1 TTTTACTTGAAAACTGGAACCTGTAAATTTGGGGCGTCATGCAAATTCCACCATCCAAAG 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 572 TTTTACTTGAAAACTGGAACTTGTAAATTTGGGGCGTCATGCAAATTCCACCATCCAAAG 631
Query 61 AATGCTGGTGGATCCATGACCCACGTTCCACTAAATATATATGGATACCCAGTACGAGAG 120
||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 632 AATGCAGGTGGATCCATGAGCCACGTTCCACTAAATATATATGGATACCCTGTACGAGAG 691
Query 121 GGTGATAACGAATGCTCCTACTATTTGAAAACGGGGCAATGCAAATTTGGTATAACCTGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 GGTGATAACGAATGCTCCTACTATTTGAAAACGGGGCAATGCAAATTTGGTATAACCTGT 751
Query 181 AAATTTCATCATCCTCAGCCTGCTGGTACAACTGTCCCACCACCACCACCAGCATCTGCA 240
||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct 752 AAATTTCATCATCCTCAGCCTGCTGGTACTACTGT--C-CCACCACCACCAGCATCTGCA 808
Query 241 CCTCAGTTTTATCCATCGGTGCAGTCACTTATGCCTGACCAGTATGGAGGTCCATCTTCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 CCTCAGTTTTATCCATCGGTGCAGTCACTTATGCCTGACCAGTATGGAGGTCCATCTTCT 868
Query 301 AGCTTGAGAGTTGCAAGAACTCTTCTTCCCGGTTCTTATATGCAAGGCGCCTATGGTCCA 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 869 AGCTTGAGAGTTGCAAGAACTCTTCTTCCTGGTTCTTATATGCAAGGCGCCTATGGTCCA 928
Query 361 ATGCTATTAACCCCCGGGGTCGTTCCTATTCCAGGCTGGAGTCCTTATTCGTCTCTTTCT 420
||||||||||||||||||||||||||||||||||||||||||||||| ||| | | ||
Sbjct 929 ATGCTATTAACCCCCGGGGTCGTTCCTATTCCAGGCTGGAGTCCTTACTCGGCAC---CT 985
Query 421 GACTCACTTTTGCTTCAGGCACCTGTGAGCCCTGCTCTATCTCCTGGTGCGCAGCACGCT 480
| | | || | |||| | | || ||||||||||||||||||||||
Sbjct 986 G--T-------G----AG-C-CCTG----C--T-CT--ATCTCCTGGTGCGCAGCACGCT 1021
Query 481 GTTGGGGCAACTTCTTTATATGGAGTTACACAGCTCTCTTCCACCACTCCTTCGCTTCCC 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1022 GTTGGGGCAACTTCTTTATATGGAGTTACACAGCTCACTTCCACCACTCCTTCGCTTCCC 1081
Query 541 GGGGTTTATCCATCTCTGTCCTCTCCTACAGGTGTTATACAGAAAGAACAGGCCTTTCCA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 GGGGTTTATCCATCTCTGTCCTCTCCTACAGGTGTTATACAGAAAGAACAGGCCTTTCCA 1141
Query 601 GAGAGACCTGGTGAACCAGAGTGCCAATACTATTTGAAAACAGGAGATTGTAAGTTTGGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 GAGAGACCTGGTGAACCAGAGTGCCAATACTATTTGAAAACAGGAGATTGTAAGTTTGGA 1201
Query 661 ACATCTTGTAAGTTTCATCATCCTCGAGATCGGGTTCCACCAAGAGCTAATTGCATCCTC 720
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1202 ACATCTTGTAAGTTTCATCATCCTCGAGATCGGGTTCCACCAAGAGCGAATTGCGTCCTC 1261
Query 721 AGCCCCATTGGCCTTCCTCTACGCCCGG 748
||||||||||| ||||||||||||||||
Sbjct 1262 AGCCCCATTGGTCTTCCTCTACGCCCGG 1289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37022566339
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5