BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887356

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G01330.2 | Symbols:  | Protein kinase superfamily protein | ...   739    0.0  


> AT4G01330.2 | Symbols:  | Protein kinase superfamily protein 
| chr4:550349-553016 FORWARD LENGTH=1986
Length=1986

 Score =  739 bits (400),  Expect = 0.0
 Identities = 448/471 (95%), Gaps = 3/471 (1%)
 Strand=Plus/Plus

Query  1     ATGGGGACTTTTGGATATGTTGCACCTGAGTATGCTTGCACGGGAATGCTGACAGAAAAG  60
             ||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||
Sbjct  1347  ATGGGAACTTTTGGATATGTTGCGCCTGAGTATGCTTGCACCGGAATGTTGACAGAAAAG  1406

Query  61    AGTGATATCTATAGTTTTGGGATATTAATCATGGAGATTATAACCGGAAGAAACCCTGTC  120
             |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct  1407  AGTGATATCTATAGTTTTGGGATATTAATCATGGAGATAATCACCGGAAGAAATCCTGTC  1466

Query  121   GATTATAGTAGACCTCAAGGAGAGGTGAATTTGGTTGAGTGGCTGAAAACAATGGTTGGA  180
             ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1467  GATTATAGTCGACCTCAAGGAGAGGTGAATTTGGTTGAGTGGCTGAAAACAATGGTTGGA  1526

Query  181   AACCGAAGGTCTGAGGAAGTAGTCGATCCAAAAATACCCGAACCACCAACTTCAAAAGCT  240
             |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct  1527  AACCGAAGGTCTGAGGAAGTAGTCGATCCAAAAATACCCGAACCGCCCACTTCAAAAGCT  1586

Query  241   CTTAAACGTGTGTTGCTCGTCGCGCTGCGGTGTGTGGATCCGGACGCGAATAAGAGACCT  300
             |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1587  CTTAAACGCGTGTTGCTCGTCGCGCTGCGTTGTGTGGATCCGGACGCGAATAAGAGACCT  1646

Query  301   AAAATGGGTCATATTATACACATGCTTGAAGCTGAAGATTTGTTCTATCGTGAC--G-AA  357
             |||||||||||||||||||||||||||||||||||||| |||||||||||||||  | ||
Sbjct  1647  AAAATGGGTCATATTATACACATGCTTGAAGCTGAAGACTTGTTCTATCGTGACCAGGAA  1706

Query  358   CGACGAGCCACGAGGGAGCATGCAAGCCGCGATTATAACCAGCCACAGACTGAAGTTTCT  417
             |||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||| 
Sbjct  1707  CGACGAGCCACGAGGGAGCATGCAAGCCGCGATTTTAACCAGCCACGGACTGAAATTTCA  1766

Query  418   GCGGCTGCAGCTGAGACGAGCGAAAGTGACAGTTCAAAAGACCGAAGATAA  468
              ||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1767  CCGGCTGTGGCTGAGACGAGCGAAAGTGACAGTTCAAAAGACCGAAGATAA  1817



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22253727121


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5