BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887357
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25100.1 | Symbols: CDC45 | cell division cycle 45 | chr3:91... 2289 0.0
> AT3G25100.1 | Symbols: CDC45 | cell division cycle 45 | chr3:9143999-9146209
FORWARD LENGTH=2211
Length=2211
Score = 2289 bits (1239), Expect = 0.0
Identities = 1376/1440 (96%), Gaps = 17/1440 (1%)
Strand=Plus/Plus
Query 3 GAATCGTTCTACGCGAAGCTTCGTGAGTCAGCTACTTCATGATCTTCACAGAATCCCACT 62
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 315 GAATCGTTCTACGCGAAGCTTCGTGAGTCAGCTACTTCATTATCTTCACAGAAT-CCAC- 372
Query 63 TTTTGATA-TTCCTTCAACATCTGATGTTGATTCACTTTGTGCGCTTAAGGTTATTACTC 121
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 TTTTGATATTTCCTTCAACATCTGATGTTGATTCACTTTGTGCGCTTAAGGTTATTACTC 432
Query 122 ATATCCTCGAATCAGATTCGATTCAGTATTCTTGTTTCCCTGTATCGTCTTTTTTGGAGA 181
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 ATATCCTTGAATCAGATTCGATTCAGTATTCTTGTTTCCCTGTATCGTCTTTTTTGGAGA 492
Query 182 TTCACAAGTATGCTGGTCCTGCTGGTTTGTGTTCTACTTCGTCT-GAGTCTCCTCCTGTT 240
|||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct 493 TTCACAAGTATGCTGGTCCTGCTGGTTTGTGTTCTACTTCGT-TGGAGAGTCCTCCTGTT 551
Query 241 ACTATACTGTTGATTAATTGGGGTTGTCACCGTGATTTGAAGCTCGTGTTGAAGTTAGGT 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 552 ACTATACTGTTGATTAATTGGGGTTGTCACCGTGATTTGAAGCTTGTGTTGAAGTTAGGT 611
Query 301 CCCGCGGCTCGTGTTTTTGTTGTTGATAGTCATAGGCCTATTCATTTGCATAATCTTAGT 360
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 CCTTCGGCTCGTGTTTTCGTTGTTGATAGTCATAGGCCTATTCATTTGCATAATCTTAGT 671
Query 361 GATTATAATGAGCAAGTTGTTGTTCTTCATACTGATGATGATGAGAGGCAAGCTGATTTG 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 672 GATTATAATGAGCAAGTTGTTGTTCTTCATACTGATGATGATGAGAGGCAAGGTGATTTG 731
Query 421 GCTTATGATTTCGATGTGTTGAAATTGGCGAACGAGAGCTTTCAGTTACATGTagaagaa 480
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 732 GCTTATGATTTCGATGTGTTGAAATTGGCGAATGAGAGCTTTCAGTTACGTGTAGAAGAT 791
Query 481 gggggtgaa---tctgatgaggaggaggaagaagatgaggaagaggaagatgaggatgat 537
| |||||| |||||||||||||||||||| |||||||||||| |||||| |||
Sbjct 792 GCTGGTGAAGAATCTGATGAGGAGGAGGAAGA---TGAGGAAGAGGA---TGAGGAGGAT 845
Query 538 gatgatgatgatggagatggtgatAGGCCAAGTAAGAGGAGAAAAATGGGAGATGGTGTG 597
||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 846 GATGATGATGATG-A--TGGTGATAGGCCAAGTAAGAGGAGGAAAATGGGAGATGGTGTG 902
Query 598 AAGGTTTTCAAGAAGTTAAAGAGGGATTATTACAAGATGGGGACTTTTCATGGGAAGCCA 657
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 AAGGTTTTCAAGAAGCTAAAGAGGGATTATTACAAGATGGGGACTTTTCATGGGAAGCCA 962
Query 658 TCGGGATGTTTGTTGTTTGAGCTATCTCATATGTTGAGGAAGAACACAAATGAGTTGTTG 717
||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 963 TCGGGGTGTTTGTTGTTTGAGCTATCTCATATGTTGAGGAAGAACACTAACGAGTTGTTG 1022
Query 718 TGGCTGGCTTGTGTTGCTTTGACTGATCAGTTTGTTCATGAGAGGTTGACTGATGAAAGA 777
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 TGGCTGGCTTGTGTTTCTTTGACTGATCAGTTTGTTCATGAGAGGTTGACTGATGAAAGA 1082
Query 778 TACCAAGCTGCGGTTATGGAGCTTGAACAACACATCAATAGCTCAGGGAATATAGATAAG 837
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 TATCAAGCTGCGGTTATGGAGCTTGAACAACACATCAATAGCTCAGGGAATATAGATAAG 1142
Query 838 ATCACTTCTGTTACTTTGAAAGATGGAACCAAGGTTCGAGCACCTGACTGTTCGAGAATC 897
|||||| ||||||| |||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1143 ATCACTAGTGTTACTCTGAAAGATGGAACCAAGGTTCGAGCACCAGACTGTTCAAGAATC 1202
Query 898 TCTTATGAAGAAGAGCCTAGGCTTATGCTTCTCAGGGAGTGGACGTTGTTTGACTCTATG 957
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 1203 TCTTATGAAGAAGAGCCTAGGCTTATGCTTCTTAGAGAGTGGACGTTGTTTGACTCCATG 1262
Query 958 CTTTGTTCTTCATACATTGCGACTAAGTTGAAGACATGGAGCGATAACGGCATCAAGAAA 1017
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1263 CTTTGTTCTTCATACATTGCGACTAAGTTGAAGACATGGAGTGATAACGGTATCAAGAAA 1322
Query 1018 CTTAAGCTTCTTCTAGCACGTATGGGATTTGCGCTTATCGAGTGCCAGCAAAAGTTTCCA 1077
||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1323 CTTAAGCTTCTTCTAGCGCGTATGGGATTTGCACTTATCGAGTGTCAGCAAAAGTTTCCG 1382
Query 1078 TACATGAGCCATGAGGTGAAAAGGAAAATGAAGCAAGAGTTTGATCGGTTTTTGCCAGAA 1137
|||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1383 TACATGAGCCTTGAGGTGAAGAGGAAGATGAAGCAAGAGTTTGATCGGTTTTTGCCAGAA 1442
Query 1138 TATGGGCTTAATGATTTCTACTACCGGAGTTTCTTGAGGCTTCATGGTTATAGCTCAAGG 1197
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1443 TATGGGCTTAATGATTTCTACTACCGGAGTTTCTTGCGGCTTCATGGTTATAGCTCAAGG 1502
Query 1198 GTCTCTGCTGCAGATGTTGTGTATGGTATTACAGCACTTCTTGAATCATTTCTTGGATCA 1257
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1503 GTCTCTGCTGCAGATGTTGTCTATGGTATTACAGCACTTCTTGAATCATTTCTTGGGTCA 1562
Query 1258 GGTGGCTCCTCTGCTTCAAAACAGTTTGGCGAAGCTTATGATGCTCTGTCTTTGAACAAT 1317
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1563 GGTGGCTCCTCTGCTTCAAAACAGTTTGGTGAAGCTTATGATGCTCTGTCTTTGAACAAT 1622
Query 1318 TTGGATAAACTTCGGTCTGGGATGCAACAAGCAATCAAGGTTCAACGAGCAATTCTTAGA 1377
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623 TTGGATAAACTTCGATCTGGGATGCAACAAGCAATCAAGGTTCAACGAGCAATTCTTAGA 1682
Query 1378 CAAGGAAGTGCAGCAATCACCAAAACTGGATGCATCCGAAGTGGTAGGAAATTCAGATGG 1437
|||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||
Sbjct 1683 CAAGGAAGTGCAGCAATCACTAAAAGTGGATGCATTCGAAGTGGTAGGAAATTCAGATGG 1742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70832968995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5