BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887362
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43750.1 | Symbols: NDH18 | NAD(P)H dehydrogenase 18 | chr5:... 953 0.0
> AT5G43750.1 | Symbols: NDH18 | NAD(P)H dehydrogenase 18 | chr5:17579966-17581222
REVERSE LENGTH=850
Length=850
Score = 953 bits (516), Expect = 0.0
Identities = 601/642 (94%), Gaps = 6/642 (1%)
Strand=Plus/Plus
Query 1 ATGGCAACGGTCATGATTCTCTCTCCCAAATCGATCCCAAAGATCA-TAGATTCGAAGTT 59
||||||||||||| ||||||||| ||||||||||| |||||| ||| | ||||| || ||
Sbjct 78 ATGGCAACGGTCACGATTCTCTCACCCAAATCGATTCCAAAGGTCACT-GATTCCAAATT 136
Query 60 TGGTGTTAAGGTTCCTGATCAGACCGTCAATGTCGTGAAATGCGGCAATTCCGGCCGGAG 119
|| | || |||| ||||||||| |||||||||||| ||||||||||| |||||||||||
Sbjct 137 CGGAGCTAGGGTTTCTGATCAGATCGTCAATGTCGTAAAATGCGGCAAATCCGGCCGGAG 196
Query 120 ATTGAGGTTAGCGAAGCTGGTCTCAGCTGCTGGATTGTCACAGATTGAACCAGATATAAA 179
||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct 197 ATTGAAGTTAGCGAAGCTGGTCTCAGCGGCTGGATTGTCACAGATCGAACCAGACATCAA 256
Query 180 CGAAGACCCCATTGGTCAATTTGAGATTAATAGCATTGAAATGGAAGATTTCAAGTATGG 239
||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 257 CGAAGACCCGATTGGTCAATTCGAGACTAATAGCATTGAAATGGAAGATTTCAAGTATGG 316
Query 240 ATATTACGATGGAGCTCATACTTACTATGAAGGAGAAGTTCAAAAGGGAACATTTTGGGG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 ATATTACGATGGAGCTCATACTTACTATGAAGGAGAAGTTCAAAAGGGAACATTTTGGGG 376
Query 300 AGCAATTGCTGATGACATTGCTGCTGTGGATCAAACAAATGGATTTCAAGGTTTAATCTC 359
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 377 AGCAATTGCTGATGACATTGCTGCTGTGGATCAAACTAATGGGTTTCAAGGTTTGATCTC 436
Query 360 TT-TGATGTTTCTTCCTGCTATAGCTGCA-GGGATGTATTTTGATGCTCCGGGTGAGTAC 417
|| | ||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 437 TTGT-ATGTTTCTTCCTGCTATAGCT-CTTGGGATGTATTTTGATGCTCCGGGTGAGTAC 494
Query 418 TTGTTCATAGGTGCAGCGTTGTTCACGGTAGTGTTTTGTATAATAGAGATGGATAAACCA 477
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 495 TTGTTCATAGGTGCAGCGTTATTCACGGTAGTGTTCTGTATAATAGAGATGGATAAACCT 554
Query 478 GACCAGCCACACAACTTTGAGCCTCAGATATACAAATTGGAGAGAGGAGCTCGCGATAAG 537
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 555 GACCAGCCACACAACTTCGAGCCTCAGATATACAAATTGGAGAGAGGAGCTCGTGACAAG 614
Query 538 CTCATTAATGATTACAACACAATGAGCATCTGGGACTTTAATGACAAGTATGGTGATGTA 597
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 615 CTCATTAATGACTACAACACAATGAGCATTTGGGACTTTAATGACAAATATGGTGATGTA 674
Query 598 TGGGATTTCACCATTGAGAAAGATGATATCGCCACACGATAA 639
||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 TGGGATTTCACCATTGAGAAAGATGATATCGCCACACGATAA 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30843766258
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5