BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887366

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42480.1 | Symbols:  | TRAF-like family protein | chr2:17685...  87.9    7e-17


> AT2G42480.1 | Symbols:  | TRAF-like family protein | chr2:17685805-17689928 
REVERSE LENGTH=2309
Length=2309

 Score = 87.9 bits (47),  Expect = 7e-17
 Identities = 53/56 (95%), Gaps = 0/56 (0%)
 Strand=Plus/Plus

Query  393   TTTGAAGACAAATCTTGAGGAGGTGTCCTTGGAGAGGAAGAAATCAGACGATGCTT  448
             ||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct  2117  TTTGAAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAATCAGACGATGCTT  2172



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21414061074


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5