BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887372

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55120.1 | Symbols: VTC5 | galactose-1-phosphate guanylyltra...   409    9e-114


> AT5G55120.1 | Symbols: VTC5 | galactose-1-phosphate guanylyltransferase 
(GDP)s;GDP-D-glucose phosphorylases;quercetin 4'-O-glucosyltransferases 
| chr5:22369095-22371867 FORWARD LENGTH=1874
Length=1874

 Score =  409 bits (221),  Expect = 9e-114
 Identities = 258/276 (93%), Gaps = 2/276 (1%)
 Strand=Plus/Plus

Query  1    ATGTTGTTGAAGATCAAAAGAGTTCCAACAGTTGTGTCGAATTATCAGAAAGATGAAACG  60
            ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || 
Sbjct  421  ATGTTGTTGAAGATCAAAAGAGTTCCAACAGTTGTATCGAATTATCAAAAAGATGAGACA  480

Query  61   GTGGAAGAAGGTGGATGTGGTCGGAATTG-CTTGAGCAAGTGTTGTATCAATGGGGCAAG  119
            || |||||||||||||||||||||||||| || |||||||||||| ||||||||||||||
Sbjct  481  GTTGAAGAAGGTGGATGTGGTCGGAATTGTCT-GAGCAAGTGTTGCATCAATGGGGCAAG  539

Query  120  ACTTCCTTTATATACTTGCAAGAATCTTGATACATTCGTCGGAGAGAAGTTAGAATCTCC  179
            ||||||||||||||| |||||||||||||||| || ||||||||||||   |||||||||
Sbjct  540  ACTTCCTTTATATACCTGCAAGAATCTTGATAAATCCGTCGGAGAGAACACAGAATCTCC  599

Query  180  GGTGACGTTCCTCGAATCTTTAGTTCTTGGAGAGTGGGAAGATCGTTTCCAAAGAGGACT  239
            |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||
Sbjct  600  GGTGACGTTCCTCGAATCCTTAGTTATTGGAGAGTGGGAAGATCGTTTCCAAAGAGGTCT  659

Query  240  TTTTCGCTACGATGTCACCGCCTGCGAAACCAAGGT  275
            ||||||||| ||||||||||||||||||||||||||
Sbjct  660  TTTTCGCTATGATGTCACCGCCTGCGAAACCAAGGT  695



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13421488983


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5