BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887377
Length=429
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57890.1 | Symbols: | Glutamine amidotransferase type 1 fam... 459 1e-128
AT1G25220.2 | Symbols: ASB1 | anthranilate synthase beta subuni... 398 3e-110
AT1G25155.1 | Symbols: | Glutamine amidotransferase type 1 fam... 331 3e-90
AT1G24909.1 | Symbols: | Glutamine amidotransferase type 1 fam... 331 3e-90
AT1G25083.1 | Symbols: | Glutamine amidotransferase type 1 fam... 331 3e-90
AT1G24807.1 | Symbols: | Glutamine amidotransferase type 1 fam... 185 2e-46
> AT5G57890.1 | Symbols: | Glutamine amidotransferase type 1 family
protein | chr5:23447407-23449679 REVERSE LENGTH=1120
Length=1120
Score = 459 bits (248), Expect = 1e-128
Identities = 342/384 (89%), Gaps = 19/384 (5%)
Strand=Plus/Plus
Query 1 ATGGCGGCTACTACACAGTACAAGTCTTGTCTTCTTCAACCTAAGTCTGGCTCCACCACT 60
||||||||||||||| |||||| || |||||||||||||| |||| ||||| |||||||
Sbjct 58 ATGGCGGCTACTACATTGTACAATTCCTGTCTTCTTCAACCGAAGTATGGCTTCACCACT 117
Query 61 CGCCGACTAAACCCTTCTCTCGTTAATC-CTCTTACGAATCCGAC---AGTTTCGGTTTT 116
||||| ||||||| ||||||||||| | |||||||||| || || ||||||||||||
Sbjct 118 CGCCGCCTAAACCAGTCTCTCGTTAA-CTCTCTTACGAACCCAACAAGAGTTTCGGTTTT 176
Query 117 GGGGAAGAGTCGTAGAGATGTGT-TTGCGAAAGCTTCGATGGAAATGGCGGAATCGAATT 175
| ||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||
Sbjct 177 GTGGAAGAGTCGTAGAGATGT-TATTGCGAAAGCTTCGATTGAAATGGCGGAATCGAATT 235
Query 176 CGATACCTTCCGTTGTTGTCAATTCCTCTAAGCAGAATGGTCCTATCATCGTCATTGATA 235
||||| |||||||||||||||||| | || | ||||||||||||||| |||||||
Sbjct 236 CGATATCTTCCGTTGTTGTCAATT-C-CT---C----TGGTCCTATCATCGTGATTGATA 286
Query 236 ATTACGACAGCTTCACTTACAATCTCTGCCAGTATATGGGAGAGCTAGGATGCCATTTCG 295
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 287 ATTACGACAGCTTCACTTACAATCTCTGCCAGTATATGGGAGAGCTAGGGTGCCATTTTG 346
Query 296 AAGTTTACCGCAATGATGAACTTACAGTAGAGGAGCTGaaaa-aaaaT--CCAAGAGGGG 352
|||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||
Sbjct 347 AAGTTTACCGCAATGATGAACTTACAGTTGAGGAGCTGAAAAGAAAAAAGCCAAGAGGAT 406
Query 353 TATTGATTTCTCCTGGACCTGGTA 376
| ||||||||||||||||||||||
Sbjct 407 TGTTGATTTCTCCTGGACCTGGTA 430
> AT1G25220.2 | Symbols: ASB1 | anthranilate synthase beta subunit
1 | chr1:8836835-8839549 REVERSE LENGTH=1536
Length=1536
Score = 398 bits (215), Expect = 3e-110
Identities = 255/274 (93%), Gaps = 3/274 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCTACTACACAGTACAAGTCTTGTCTTCTTCAACCTAAGTCTGGCTCCACCACT 60
||||||||| ||||| |||||| || |||||||||||||| ||||||||||||||||||
Sbjct 72 ATGGCGGCTTCTACATTGTACAAATCCTGTCTTCTTCAACCCAAGTCTGGCTCCACCACT 131
Query 61 CGCCGACTAAACCCTTCTCTCGTTAATCCTCTTACGAATCCGAC---AGTTTCGGTTTTG 117
||||| |||||||||||||||||||| |||||||||||||| || |||||| ||||||
Sbjct 132 CGCCGCCTAAACCCTTCTCTCGTTAACCCTCTTACGAATCCCACAAGAGTTTCCGTTTTG 191
Query 118 GGGAAGAGTCGTAGAGATGTGTTTGCGAAAGCTTCGATGGAAATGGCGGAATCGAATTCG 177
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 192 GGGAAGAGTCGTAGAGATGTCTTTGCGAAAGCTTCGATTGAAATGGCGGAATCGAATTCG 251
Query 178 ATACCTTCCGTTGTTGTCAATTCCTCTAAGCAGAATGGTCCTATCATCGTCATTGATAAT 237
||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||
Sbjct 252 ATACCTTCCGTTGTTGTCAATTCCTCTAAGCAGCATGGTCCAATCATCGTGATTGATAAT 311
Query 238 TACGACAGCTTCACTTACAATCTCTGCCAGTATA 271
|||||||||||||| |||||||||||||||||||
Sbjct 312 TACGACAGCTTCACATACAATCTCTGCCAGTATA 345
Score = 165 bits (89), Expect = 3e-40
Identities = 107/115 (93%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 265 CAGTATATGGGAGAGCTAGGATGCCATTTCGAAGTTTACCGCAATGATGAACTTACAGTA 324
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 378 CAGTATATGGGAGAGCTAGGATGCCATTTTGAAGTTTACCGCAATGATGAACTTACAGTA 437
Query 325 GAGGAGCTGaaaaaaaa---TCCAAGAGGGGTATTGATTTCTCCTGGACCTGGTA 376
|| |||||||||||||| |||||||||||| ||||||||||| || |||||||
Sbjct 438 GAAGAGCTGAAAAAAAAAAATCCAAGAGGGGTGTTGATTTCTCCAGGGCCTGGTA 492
> AT1G25155.1 | Symbols: | Glutamine amidotransferase type 1 family
protein | chr1:8822692-8824821 REVERSE LENGTH=1029
Length=1029
Score = 331 bits (179), Expect = 3e-90
Identities = 207/220 (94%), Gaps = 3/220 (1%)
Strand=Plus/Plus
Query 160 ATGGCGGAATCGAATTCGATACCTTCCGTTGTTGTCAATTCCTCTAAGCAGAATGGTCCT 219
||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1 ATGGCAGAATCGAATTCGATACCTTCCGTTGTTATCAATTCCTCTAAACAGAATGGTCCT 60
Query 220 ATCATCGTCATTGATAATTACGACAGCTTCACTTACAATCTCTGCCAGTATATGGGAGAG 279
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCATCGTGATTGATAATTACGACAGCTTCACTTACAATCTCTGCCAGTATATGGGAGAG 120
Query 280 CTAGGATGCCATTTCGAAGTTTACCGCAATGATGAACTTACAGTAGAGGAGCTGaaaa-a 338
||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 121 CTACAATGCCATTTTGAAGTTTACCGCAATGATGAACTTACAGTAGAAGAGCTGAAAAGA 180
Query 339 aaa--TCCAAGAGGGGTATTGATTTCTCCTGGACCTGGTA 376
||| ||||||||| || ||||||||||||||||||||||
Sbjct 181 AAAAATCCAAGAGGAGTGTTGATTTCTCCTGGACCTGGTA 220
> AT1G24909.1 | Symbols: | Glutamine amidotransferase type 1 family
protein | chr1:8785785-8787914 REVERSE LENGTH=1029
Length=1029
Score = 331 bits (179), Expect = 3e-90
Identities = 207/220 (94%), Gaps = 3/220 (1%)
Strand=Plus/Plus
Query 160 ATGGCGGAATCGAATTCGATACCTTCCGTTGTTGTCAATTCCTCTAAGCAGAATGGTCCT 219
||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1 ATGGCAGAATCGAATTCGATACCTTCCGTTGTTATCAATTCCTCTAAACAGAATGGTCCT 60
Query 220 ATCATCGTCATTGATAATTACGACAGCTTCACTTACAATCTCTGCCAGTATATGGGAGAG 279
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCATCGTGATTGATAATTACGACAGCTTCACTTACAATCTCTGCCAGTATATGGGAGAG 120
Query 280 CTAGGATGCCATTTCGAAGTTTACCGCAATGATGAACTTACAGTAGAGGAGCTGaaaa-a 338
||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 121 CTACAATGCCATTTTGAAGTTTACCGCAATGATGAACTTACAGTAGAAGAGCTGAAAAGA 180
Query 339 aaa--TCCAAGAGGGGTATTGATTTCTCCTGGACCTGGTA 376
||| ||||||||| || ||||||||||||||||||||||
Sbjct 181 AAAAATCCAAGAGGAGTGTTGATTTCTCCTGGACCTGGTA 220
> AT1G25083.1 | Symbols: | Glutamine amidotransferase type 1 family
protein | chr1:8808549-8810443 REVERSE LENGTH=794
Length=794
Score = 331 bits (179), Expect = 3e-90
Identities = 207/220 (94%), Gaps = 3/220 (1%)
Strand=Plus/Plus
Query 160 ATGGCGGAATCGAATTCGATACCTTCCGTTGTTGTCAATTCCTCTAAGCAGAATGGTCCT 219
||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1 ATGGCAGAATCGAATTCGATACCTTCCGTTGTTATCAATTCCTCTAAACAGAATGGTCCT 60
Query 220 ATCATCGTCATTGATAATTACGACAGCTTCACTTACAATCTCTGCCAGTATATGGGAGAG 279
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCATCGTGATTGATAATTACGACAGCTTCACTTACAATCTCTGCCAGTATATGGGAGAG 120
Query 280 CTAGGATGCCATTTCGAAGTTTACCGCAATGATGAACTTACAGTAGAGGAGCTGaaaa-a 338
||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 121 CTACAATGCCATTTTGAAGTTTACCGCAATGATGAACTTACAGTAGAAGAGCTGAAAAGA 180
Query 339 aaa--TCCAAGAGGGGTATTGATTTCTCCTGGACCTGGTA 376
||| ||||||||| || ||||||||||||||||||||||
Sbjct 181 AAAAATCCAAGAGGAGTGTTGATTTCTCCTGGACCTGGTA 220
> AT1G24807.1 | Symbols: | Glutamine amidotransferase type 1 family
protein | chr1:8771766-8773535 REVERSE LENGTH=708
Length=708
Score = 185 bits (100), Expect = 2e-46
Identities = 108/112 (96%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 160 ATGGCGGAATCGAATTCGATACCTTCCGTTGTTGTCAATTCCTCTAAGCAGAATGGTCCT 219
||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1 ATGGCAGAATCGAATTCGATACCTTCCGTTGTTATCAATTCCTCTAAACAGAATGGTCCT 60
Query 220 ATCATCGTCATTGATAATTACGACAGCTTCACTTACAATCTCTGCCAGTATA 271
|||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCATCGTGATTGATAATTACGACAGCTTCACTTACAATCTCTGCCAGTATA 112
Score = 159 bits (86), Expect = 1e-38
Identities = 106/115 (92%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 265 CAGTATATGGGAGAGCTAGGATGCCATTTCGAAGTTTACCGCAATGATGAACTTACAGTA 324
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 145 CAGTATATGGGAGAGCTACAATGCCATTTTGAAGTTTACCGCAATGATGAACTTACAGTA 204
Query 325 GAGGAGCTGaaaa-aaaa--TCCAAGAGGGGTATTGATTTCTCCTGGACCTGGTA 376
|| |||||||||| |||| ||||||||| || ||||||||||||||||||||||
Sbjct 205 GAAGAGCTGAAAAGAAAAAATCCAAGAGGAGTGTTGATTTCTCCTGGACCTGGTA 259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20358438345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5