BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887378
Length=687
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62650.1 | Symbols: | Tic22-like family protein | chr5:2515... 1070 0.0
> AT5G62650.1 | Symbols: | Tic22-like family protein | chr5:25152625-25155935
REVERSE LENGTH=1901
Length=1901
Score = 1070 bits (579), Expect = 0.0
Identities = 653/689 (95%), Gaps = 4/689 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGAGATTGGCAGTTCCGGAATTCCTTTGAGTGTTGTGGCAAAGGCTGCAGAGATT 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 ATGGAGGAGATTGGCACTTCCGGAATTCCTTTGAGTGTTGTGGCAAAGGCTGCAGAGATT 1026
Query 61 CAGCTCCTATATGCCGTTGACAGAGTACTTTTAGGCAGTAGATGGTTTCGAAAAGCCACG 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1027 CAGCTCCTATATGCCGTTGACAGAGTACTTTTAGGTAGTAGATGGTTTCGAAAAGCCACG 1086
Query 121 GGTATTCAGCCAAAGTTACCTTATTTGGTTGATTCTTTTGAAAGAAGGAGTGCATTTTCT 180
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1087 GGTATCCAGCCAAAGTTACCTTATTTGGTCGATTCTTTTGAAAGAAGGAGTGCATTTTCT 1146
Query 181 ATCCAAAGAGCGTCAGGGTCAGCAACTAGATGTCTTGGTGATTCAGTAGAAGCAGATACT 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1147 ATCCAAAGAGCGTCAGGGTCAGCAACAAGATGTCTTGGTGATTCAGTAGAAGCAGATACT 1206
Query 241 TCCGCATCACTGCTTAGAGTAGAAGATAATAGTCCAAGCGAAGAC-GAAAAGAGACAGCA 299
||||||||||| ||||||||||||||| |||||||||| |||| | ||||||||||||||
Sbjct 1207 TCCGCATCACTACTTAGAGTAGAAGATGATAGTCCAAGTGAAG-CTGAAAAGAGACAGCA 1265
Query 300 AAATCTCTGGTTTCCTTTTGGAGATTGGATTAATCACTCTGAATCGAA-AAAAGAACACA 358
| |||||||||||||||||||||||||||| | |||||||| ||| || |||||||||||
Sbjct 1266 ACATCTCTGGTTTCCTTTTGGAGATTGGATCAGTCACTCTGTATC-AAGAAAAGAACACA 1324
Query 359 CTCATCATAAGGGTCCATCAGATGGAAGGGATATGGAATCTAGAGAGAGAGAAATGCTGC 418
| ||||| |||||| |||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1325 CACATCACAAGGGTTCATCAGATCAAAGGGATATGGAATCTAGAGAAAGAGAAATGCTGC 1384
Query 419 GAAGTCCTTTCTTACCAAAGATAACAATGGTAGGGATTTCAACAGGAGAAGCTGCACAAA 478
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1385 GAAGTCCATTCTTACCAAAGATAACAATGGTAGGGATTTCAACAGGAGAAGCTGCACAGA 1444
Query 479 TGAGTAAGGCTAATCTCAAGAAAACAATGGAAGATTTAACAGAAGACTTGGAGCAATCTG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 TGAGTAAGGCTAATCTCAAGAAAACAATGGAAGATTTAACAGAAGACTTGGAGCAATCTG 1504
Query 539 ATGAAGGGAATGATCATGGTTCGAAACGTTATGACCCTCGAAAGATGGAAGAGAGAGATC 598
|||||||||| ||||||||||| |||||||| ||| ||| |||||| |||||||||||||
Sbjct 1505 ATGAAGGGAACGATCATGGTTCAAAACGTTACGACTCTCTAAAGATTGAAGAGAGAGATC 1564
Query 599 CTCTTTTTGTTGCAAACGTCGGAGATTACTATTCGGGTATGGCGAAAGCTGGTTCTGCTC 658
|||| |||||||||||||||||||| |||||||||||| |||| ||||||||||||||||
Sbjct 1565 CTCTATTTGTTGCAAACGTCGGAGACTACTATTCGGGTTTGGCTAAAGCTGGTTCTGCTC 1624
Query 659 GGTTGTCACGTCGAGGGGATGACCAGTAA 687
||||||||||| |||| ||||||||||||
Sbjct 1625 GGTTGTCACGTAGAGGTGATGACCAGTAA 1653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33255005314
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5