BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887379

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G62640.3 | Symbols:  | proline-rich family protein | chr5:25...   300    7e-81


> AT5G62640.3 | Symbols:  | proline-rich family protein | chr5:25149433-25152541 
REVERSE LENGTH=1964
Length=1964

 Score =  300 bits (162),  Expect = 7e-81
 Identities = 214/236 (91%), Gaps = 15/236 (6%)
 Strand=Plus/Plus

Query  109  AACAAGAAAGAGAGGCAAAAGGTAAGAGAGGTTGGAATTTTGAAGAAGGATCCTGAACAA  168
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| 
Sbjct  347  AACAAGAAAGAGAGGCAAAAGGTACGAGAGGTTGGAATTTTGAAGAAGGATCCTGAACAG  406

Query  169  ATCAAGGAACAGATCAGGAAACTTGATATGTCTAAGGCGGAAGGTGCTTTGGACAAAGCA  228
            |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct  407  ATCAAGGATCAGATCAGGAAGCTTGATATGTCAAAGGCGGAAGGTGCTTTGGACAAAGCA  466

Query  229  AGAAAACATAAAAAGAGACAGCTTGAAGATACTCTAAAAATGGTGGTGAAGAAGAGAAAG  288
            ||||||||||||||||||||||||||||||||||| ||||||||||  ||          
Sbjct  467  AGAAAACATAAAAAGAGACAGCTTGAAGATACTCTTAAAATGGTGG--AA----------  514

Query  289  GAATATGATGAGAAAAAGAAGGAGCAAGGTGAGGCAACAACCTCTGTTATGTTCAG  344
               |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  515  ---TATGATGAGAAAAAGAAGGAGCAAGGAGAGGCAACAACCTCTGTTATGTTCAG  567


 Score =  139 bits (75),  Expect = 2e-32
 Identities = 80/82 (98%), Gaps = 1/82 (1%)
 Strand=Plus/Plus

Query  1    ATGAAGACGACGAAGGGAGGCAAAGTGATGAACCCTACTGATGCTTATCGCAAGCAGATT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  191  ATGAAGACGACGAAGGGAGGCAAAGTGATGAACCCTACTGATGCTTATCGCAAGCAGATT  250

Query  61   TCGCAAGAGAGAAATAAAGCGT  82
             |||||||||||||| ||||||
Sbjct  251  -CGCAAGAGAGAAATTAAGCGT  271



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16286750676


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5