BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887385

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G28990.1 | Symbols:  | Leucine-rich repeat protein kinase fa...   460    3e-129


> AT2G28990.1 | Symbols:  | Leucine-rich repeat protein kinase 
family protein | chr2:12455055-12459541 FORWARD LENGTH=2655
Length=2655

 Score =  460 bits (249),  Expect = 3e-129
 Identities = 293/314 (93%), Gaps = 4/314 (1%)
 Strand=Plus/Plus

Query  7     AACCGCCCTATAATTCAGCAATCCCGTGAAAAACCTCACTTAGTGGAATGGGTCAGTTTT  66
             ||||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct  2323  AACCGTCCTATAATCCAGCAATCCCGTGAAAAGCCTCACATAGTGGAATGGGTCAGTTTT  2382

Query  67    ATGATAACCAAAGGAGATATTAGAAATATTATGGATCCAAACCTCCACCACA-ATTATGA  125
             |||||||| ||||||||| |||||| |||||||||||||||||||||||| | |||||||
Sbjct  2383  ATGATAACAAAAGGAGATCTTAGAAGTATTATGGATCCAAACCTCCACCA-AGATTATGA  2441

Query  126   CATTGGTTCTGTCTGGAAGGCCATTGAAATAGCAATGTCATGTGTGAATCTTTCTTCTAC  185
              ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
Sbjct  2442  TATTGGTTCTGTCTGGAAGGCCATTGAATTAGCAATGTCATGTGTGAGTCTTTCTTCTGC  2501

Query  186   AAGACGACCAAACATGTCTC-AGGTTGTGAATGAATTAAAAGAATGTCTGATATCCGAAA  244
             |||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||
Sbjct  2502  AAGACGACCAAACATGTCTCGAG-TTGTGAATGAATTAAAAGAATGTCTTATATCCGAAA  2560

Query  245   CCTCTAGGATAGGAGAGGGACGAGACATGGAATCTAAAGGTTCAATGGACTACAGCAAAG  304
             ||||||||||||| |||||||||||||||||||| |||||||||||||| | ||||| ||
Sbjct  2561  CCTCTAGGATAGGTGAGGGACGAGACATGGAATCAAAAGGTTCAATGGAATTCAGCAGAG  2620

Query  305   ACATTTATAATGAG  318
             ||||||||||||||
Sbjct  2621  ACATTTATAATGAG  2634



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14778718206


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5