BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887388
Length=369
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44495.1 | Symbols: | ECA1 gametogenesis related family pro... 448 2e-125
AT5G44555.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 429 9e-120
> AT5G44495.1 | Symbols: | ECA1 gametogenesis related family protein
| chr5:17926351-17926710 REVERSE LENGTH=360
Length=360
Score = 448 bits (242), Expect = 2e-125
Identities = 313/347 (90%), Gaps = 6/347 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTTCAAAAACGTGAT-TT-TTCTCCTAGCGGTTCTATGCATTGCACTGTCTGCAA 58
|||||| | ||||||||||| || || | ||||||||| ||||||||||| |||||| ||
Sbjct 1 ATGGCTATAAAAAACGTGATCTTATT-T-CTAGCGGTTTTATGCATTGCATTGTCTGTAA 58
Query 59 ATGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTC 118
|||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 59 ATGCCCAATTACCACAATTTCCGGCACTTTTTCCTTTTCCATTTCCATTTCTACCGAGTC 118
Query 119 TCGGTGTACCAGGATTACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAG 178
|||||||||||||||||||||||||||||||||||| |||||| | || ||||||||||
Sbjct 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTTATCATCTGTGATAAATATTCCAG 178
Query 179 GGTGTATCGCAGAGTTTTCGCAATCCATACTCATTGGAAA-GTTCGGAAACATAGGCCCT 237
|||| |||| |||||||||||||||||||||| || |||| |||||| || ||||| |
Sbjct 179 GGTGCATCGTAGAGTTTTCGCAATCCATACTC-TTAGAAAAGTTCGGCAAGATAGGTTCA 237
Query 238 GCTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAAT 297
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||
Sbjct 238 GCTTGTTGCAAAGCAATTTTGGAAGCCGAAACCAATTGTATTCCGCAACTTCCGTTCAAT 297
Query 298 CCATTTTTTCCTCCTATGCTAAAGGAACAGTGTTCAAAAACTGTTGG 344
|| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 298 CCGTTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGG 344
> AT5G44555.1 | Symbols: | Encodes a ECA1 gametogenesis related
family protein [pseudogene] | chr5:17944809-17945167 FORWARD
LENGTH=359
Length=359
Score = 429 bits (232), Expect = 9e-120
Identities = 326/370 (88%), Gaps = 12/370 (3%)
Strand=Plus/Plus
Query 1 ATGGCTTTCAAAAACGTGATTTTTCTCCTAGCGGTTCTATGCATTGCACTGTCTGCAAAT 60
||||| ||||||||||||||||||| ||| || || ||||| ||||| |||||||||||
Sbjct 1 ATGGCAATCAAAAACGTGATTTTTCTTCTATCGATTGTATGCGTTGCAATGTCTGCAAAT 60
Query 61 GCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTCTC 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 61 GCTCAATTACCTCAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCCA-T-TC 118
Query 121 GGTGTACCAGGAT-TACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAGG 179
|| || | || ||| ||||||||||||||| ||||| |||||||||||| ||||
Sbjct 119 ------CC-GG-TGTA-CTGGTATAACAAAATGTTTATCATCCTTTATGAATATTGCAGG 169
Query 180 GTGTATCGCAGAGTTTTCGCAATCCATACTCATTGGAAAGTTCGGAAACATAGGCCCTGC 239
|||||||||||||||||| ||||| ||||||| ||||||||| || |||||||||||||
Sbjct 170 GTGTATCGCAGAGTTTTCACAATCTATACTCACTGGAAAGTTTGGCAACATAGGCCCTGT 229
Query 240 TTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAATCC 299
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 230 TTGTTGCAAAGCAATTTTGGAAGCTGAAACCAACTGTATTCCGCAACTTCCATTCAATCC 289
Query 300 ATTTTTTCCTCCTATGCTAAAGGAACAGTGTTCAAAAACTGTTGGTGCACTTCCTCCTAC 359
||||||||||||| ||||||||||||| ||||||||||| ||||| ||| || ||| |||
Sbjct 290 ATTTTTTCCTCCTCTGCTAAAGGAACAATGTTCAAAAACCGTTGGCGCAATTTCTCATAC 349
Query 360 CAAAAAGTAG 369
| |||||||
Sbjct 350 GAGAAAGTAG 359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17342373405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5