BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887389
Length=369
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44495.1 | Symbols: | ECA1 gametogenesis related family pro... 436 5e-122
AT5G44555.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 429 9e-120
> AT5G44495.1 | Symbols: | ECA1 gametogenesis related family protein
| chr5:17926351-17926710 REVERSE LENGTH=360
Length=360
Score = 436 bits (236), Expect = 5e-122
Identities = 305/338 (90%), Gaps = 6/338 (2%)
Strand=Plus/Plus
Query 10 AAAAACGTGAT-TT-TTCTACTGGCGGTTTTATGCATTGCACTGTCTGCAAATGCTCAAT 67
||||||||||| || || | || |||||||||||||||||| |||||| |||||| ||||
Sbjct 10 AAAAACGTGATCTTATT-T-CTAGCGGTTTTATGCATTGCATTGTCTGTAAATGCCCAAT 67
Query 68 TACCACAATTTCCGGCACCGTTTCCTTTTCCATTTTCATTCCTACCGAGTCCCGGTGTAC 127
|||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||
Sbjct 68 TACCACAATTTCCGGCACTTTTTCCTTTTCCATTTCCATTTCTACCGAGTCCCGGTGTAC 127
Query 128 CAGGATTACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAGGGTGTATCG 187
|||||||||||||||||||||||||||| |||||| | || |||||||||||||| ||||
Sbjct 128 CAGGATTACCTGATATAACAAAATGTTTATCATCTGTGATAAATATTCCAGGGTGCATCG 187
Query 188 CAGAGTTTTCGCAATCTATACTCATTGGAAA-GTTCGGAAACATAGGCCCTGCTTGTTGC 246
||||||||||||||| |||||| || |||| |||||| || ||||| | |||||||||
Sbjct 188 TAGAGTTTTCGCAATCCATACTC-TTAGAAAAGTTCGGCAAGATAGGTTCAGCTTGTTGC 246
Query 247 AAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAATCCATTTTTT 306
||||||||||||||||| ||||||||||| ||||| |||||||| |||||||| ||||||
Sbjct 247 AAAGCAATTTTGGAAGCCGAAACCAATTGTATTCCGCAACTTCCGTTCAATCCGTTTTTT 306
Query 307 CCTCCTATGCTAAAGGAACAGTGTTCAAAAACTGTTGG 344
|||||||||||||||||||| |||||||||||||||||
Sbjct 307 CCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGG 344
> AT5G44555.1 | Symbols: | Encodes a ECA1 gametogenesis related
family protein [pseudogene] | chr5:17944809-17945167 FORWARD
LENGTH=359
Length=359
Score = 429 bits (232), Expect = 9e-120
Identities = 325/369 (88%), Gaps = 10/369 (3%)
Strand=Plus/Plus
Query 1 ATGGCCTTCAAAAACGTGATTTTTCTACTGGCGGTTTTATGCATTGCACTGTCTGCAAAT 60
||||| ||||||||||||||||||| || || || ||||| ||||| |||||||||||
Sbjct 1 ATGGCAATCAAAAACGTGATTTTTCTTCTATCGATTGTATGCGTTGCAATGTCTGCAAAT 60
Query 61 GCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTTCATTCCTACCGAGTCCC 120
||||||||||| |||||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct 61 GCTCAATTACCTCAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCCATTCCC 120
Query 121 GGTGTACCAGGATTACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAGGG 180
| || | || ||| ||||||||||||||| ||||| |||||||||||| |||||
Sbjct 121 -G-GT-----G--TA-CTGGTATAACAAAATGTTTATCATCCTTTATGAATATTGCAGGG 170
Query 181 TGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAAGTTCGGAAACATAGGCCCTGCT 240
||||||||||||||||| ||||||||||||| ||||||||| || ||||||||||||| |
Sbjct 171 TGTATCGCAGAGTTTTCACAATCTATACTCACTGGAAAGTTTGGCAACATAGGCCCTGTT 230
Query 241 TGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAATCCA 300
|||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 231 TGTTGCAAAGCAATTTTGGAAGCTGAAACCAACTGTATTCCGCAACTTCCATTCAATCCA 290
Query 301 TTTTTTCCTCCTATGCTAAAGGAACAGTGTTCAAAAACTGTTGGTGCACTTCCTCCTACC 360
|||||||||||| ||||||||||||| ||||||||||| ||||| ||| || ||| |||
Sbjct 291 TTTTTTCCTCCTCTGCTAAAGGAACAATGTTCAAAAACCGTTGGCGCAATTTCTCATACG 350
Query 361 AAAAAGTAG 369
| |||||||
Sbjct 351 AGAAAGTAG 359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17342373405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5