BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887390
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80760.1 | Symbols: NIP6;1, NIP6, NLM7 | NOD26-like intrinsi... 1179 0.0
> AT1G80760.1 | Symbols: NIP6;1, NIP6, NLM7 | NOD26-like intrinsic
protein 6;1 | chr1:30350539-30352208 REVERSE LENGTH=1212
Length=1212
Score = 1179 bits (638), Expect = 0.0
Identities = 697/726 (96%), Gaps = 2/726 (0%)
Strand=Plus/Plus
Query 1 ATGGATCATGAGGAAATTCCATCAATGCCCTCAACGCCGGCTACAACCCCGGGGACACCA 60
||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| |||
Sbjct 194 ATGGATCATGAGGAAATTCCATCCACGCCCTCAACGCCGGCGACAACCCCGGGGACTCCA 253
Query 61 GGAGCACCGCTCTTTGGAGGATTCGAAGGGAAGAGGAATGGACACAATGGTAAATACACA 120
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 254 GGAGCGCCGCTCTTTGGAGGATTCGAAGGGAAGAGGAATGGACACAATGGTAGATACACA 313
Query 121 CCAAAGTCACTTCTAAAAAGCTGCAAATGTTTCAGTGTTGACAATGAATGGGCTCTTGAA 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 CCAAAGTCACTTCTCAAAAGCTGCAAATGTTTCAGTGTTGACAATGAATGGGCTCTTGAA 373
Query 181 GATGGAAGACTCCCTCCGGTCTCTTGCTCTCTCCCTCCCCCTAATGTCTCCCTCTACCGC 240
||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct 374 GATGGAAGACTCCCTCCGGTCACTTGCTCTCTCCCTCCCCCTAACGTTTCCCTCTACCGC 433
Query 241 AAGTTGGGAGCAGAGTTTGTTGGGACATTGATCCTAATATTCGCTGGAACAGCGACGGCG 300
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 434 AAGTTGGGAGCAGAGTTTGTTGGGACATTGATCCTGATATTCGCCGGAACAGCGACGGCG 493
Query 301 ATCGTGAACCAGAAGACAGATGGAGCTGAGACGCTTATTGGTTGCGCCGCGTCGGCTGGT 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 494 ATCGTGAACCAGAAGACAGATGGAGCTGAGACGCTTATTGGTTGCGCCGCCTCGGCTGGT 553
Query 361 TTGGCGGTTATGATCGTTATTTTATCGACTGGTCACATATCCGGGGCGCATCTCAATCCG 420
|||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||||
Sbjct 554 TTGGCGGTTATGATCGTTATATTATCGACCGGTCACATCTCCGGGGCACATCTCAATCCG 613
Query 421 GCTGTCACTATTGCCTTTGCTGCTCTCAAACACTTCCCTTGGAAACACGTGCCGGTGTAC 480
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 GCTGTAACCATTGCCTTTGCTGCTCTCAAACACTTCCCTTGGAAACACGTGCCGGTGTAT 673
Query 481 ATCGGAGCTCAGGTGATGGCCTCCGTGTGTGCGGCGTTTGCACTGAAAGCAGTGTTTGAA 540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 674 ATCGGAGCTCAGGTGATGGCCTCCGTGAGTGCGGCGTTTGCACTGAAAGCAGTGTTTGAA 733
Query 541 CCAACGATGAGCGGTGGCGTGACGGTGCCGACGGTGGGTCTAAGCCAAGCCTTT-GCCTT 599
||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||
Sbjct 734 CCAACGATGAGCGGTGGCGTGACGGTGCCGACGGTGGGTCTCAGCCAAGC-TTTCGCCTT 792
Query 600 GGAGTTCATTATCAGCTTCAACCTCATGTTCGTTGTCACAGCCGTAGCCACCGACACGAG 659
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 GGAATTCATTATCAGCTTCAACCTCATGTTCGTTGTCACAGCCGTAGCCACCGACACGAG 852
Query 660 AGCTGTGGGAGAGCTGGCGGGAATTGCGGTAGGAGCAACGGTCATGCTTAATATACTCAT 719
||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 853 AGCTGTGGGAGAGTTGGCGGGAATTGCCGTAGGAGCAACGGTCATGCTTAACATACTTAT 912
Query 720 AGCTGG 725
||||||
Sbjct 913 AGCTGG 918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5